RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 FURINP09958 794 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 ERVK-10P10266 1014 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 PAMP19021 973 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 TCN2P20062 427 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 RPS3P23396 243 aaKnown RBP eCLIP11.11□□□□□ -0.63
VCAN-212ENST00000515397 OAS2P29728 719 aaKnown RBP11.11□□□□□ -0.63
VCAN-212ENST00000515397 SHMT2P34897 504 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 SLC1A2P43004 574 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 PGGT1BP53609 377 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 RPS18P62269 152 aaKnown RBP11.11□□□□□ -0.63
VCAN-212ENST00000515397 YBX1P67809 324 aaKnown RBP11.11□□□□□ -0.63
VCAN-212ENST00000515397 TUBB4BP68371 445 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 PLOD1Q02809 727 aaPredicted RBP11.11□□□□□ -0.63
VCAN-212ENST00000515397 PTK6Q13882 451 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 TUBB2AQ13885 445 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 ERV3-1Q14264 604 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 TMED2Q15363 201 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 TYSND1Q2T9J0 566 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 DEFB109BQ30KR1 87 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 DNAJC21Q5F1R6 531 aaKnown RBP11.11□□□□□ -0.63
VCAN-212ENST00000515397 TMTC4Q5T4D3 741 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 ZNF549Q6P9A3 640 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 HOOK3Q86VS8 718 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 KMT5CQ86Y97 462 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 TMEM126BQ8IUX1 230 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 ZNF843Q8N446 348 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 GSDMBQ8TAX9 411 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 CT55Q8WUE5 264 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 KIAA1143Q96AT1 154 aaPredicted RBP11.11□□□□□ -0.63
VCAN-212ENST00000515397 SLC45A3Q96JT2 553 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 ARHGAP9Q9BRR9 750 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 TUBB2BQ9BVA1 445 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 TSSK1BQ9BXA7 367 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 SPRTNQ9H040 489 aaPredicted RBP11.11□□□□□ -0.63
VCAN-212ENST00000515397 LHX9Q9NQ69 397 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 IARS2Q9NSE4 1012 aaKnown RBP11.11□□□□□ -0.63
VCAN-212ENST00000515397 PCYOX1Q9UHG3 505 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 POLG2Q9UHN1 485 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 PADI1Q9ULC6 663 aa11.11□□□□□ -0.63
VCAN-212ENST00000515397 TLN1Q9Y490 2541 aaKnown RBP11.11□□□□□ -0.63
VCAN-212ENST00000515397 ZNF891A8MT65 544 aaPredicted RBP11.1□□□□□ -0.63
VCAN-212ENST00000515397 C1orf105O95561 183 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 CCNYL3P0C7X3 344 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 PKMP14618 531 aaKnown RBP11.1□□□□□ -0.63
VCAN-212ENST00000515397 PKLRP30613 574 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 GRIA3P42263 894 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 NFKB2Q00653 900 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 DR1Q01658 176 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 GPS2Q13227 327 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 CUL1Q13616 776 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 FASTKQ14296 549 aaKnown RBP11.1□□□□□ -0.63
VCAN-212ENST00000515397 KYNUQ16719 465 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 LONRF1Q17RB8 773 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 LRRC6Q86X45 466 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 STARD8Q92502 1023 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 MR1Q95460 341 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 CFAP36Q96G28 342 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 PANX3Q96QZ0 392 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 KRT12Q99456 494 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 MENTQ9BUN1 341 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 PITPNM3Q9BZ71 974 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 CHST8Q9H2A9 424 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 SLC39A10Q9ULF5 831 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 BTRCQ9Y297 605 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 MED16Q9Y2X0 877 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 FAM169AQ9Y6X4 670 aa11.1□□□□□ -0.63
VCAN-212ENST00000515397 E5RI56 91 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 PYCARD-AS1I3L0S3 204 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 MATN2O00339 956 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 TERTO14746 1132 aaKnown RBP11.09□□□□□ -0.63
VCAN-212ENST00000515397 USP1O94782 785 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 ESR1P03372 595 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 OGNP20774 298 aaKnown RBP11.09□□□□□ -0.63
VCAN-212ENST00000515397 CYP2A7P20853 494 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 CD9P21926 228 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 PSMB5P28074 263 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 PAFAH1B1P43034 410 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 RAB28P51157 221 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 ITGA8P53708 1063 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 DNASE1L3Q13609 305 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 TSTA3Q13630 321 aaPredicted RBP11.09□□□□□ -0.63
VCAN-212ENST00000515397 KLHL38Q2WGJ6 581 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 PTCHD3Q3KNS1 767 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 PLEKHS1Q5SXH7 462 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 C1orf189Q5VU69 101 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 ANKMY2Q8IV38 441 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 DCUN1D3Q8IWE4 304 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 ZBTB2Q8N680 514 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 C19orf47Q8N9M1 422 aaKnown RBP11.09□□□□□ -0.63
VCAN-212ENST00000515397 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.09□□□□□ -0.63
VCAN-212ENST00000515397 GIMAP7Q8NHV1 300 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 CLIP3Q96DZ5 547 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 TCF12Q99081 682 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 NDNQ99608 321 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 EBNA1BP2Q99848 306 aaKnown RBP11.09□□□□□ -0.63
VCAN-212ENST00000515397 WDR83Q9BRX9 315 aaKnown RBP11.09□□□□□ -0.63
VCAN-212ENST00000515397 PLAC1Q9HBJ0 212 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 ABCF3Q9NUQ8 709 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 OR6C2Q9NZP2 312 aa11.09□□□□□ -0.63
VCAN-212ENST00000515397 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms