RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 FAM162AQ96A26 154 aa3.78□□□□□ -1.8
HMGB1P28-201ENST00000507778 CITED2Q99967 270 aaPredicted RBP3.78□□□□□ -1.8
HMGB1P28-201ENST00000507778 ZNF556Q9HAH1 456 aa3.78□□□□□ -1.8
HMGB1P28-201ENST00000507778 CDH20Q9HBT6 801 aa3.78□□□□□ -1.8
HMGB1P28-201ENST00000507778 ZNF701Q9NV72 531 aaPredicted RBP3.78□□□□□ -1.8
HMGB1P28-201ENST00000507778 NOL7Q9UMY1 257 aaKnown RBP3.78□□□□□ -1.8
HMGB1P28-201ENST00000507778 ACSL3O95573 720 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 CAVIN2O95810 425 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 NR3C1P04150 777 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 GNAZP19086 355 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 PTGER4P35408 488 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 KRTAP10-11P60412 298 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 ARL16Q0P5N6 197 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 CUL3Q13618 768 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 VEZF1Q14119 521 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 CA9Q16790 459 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 MCMDC2Q4G0Z9 681 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 TCTE1Q5JU00 501 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 ZNF771Q7L3S4 317 aaPredicted RBP3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 SPATA21Q7Z572 469 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 ABI3BPQ7Z7G0 1075 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 GLRX5Q86SX6 157 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 TMEM139Q8IV31 216 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 FOXP4Q8IVH2 680 aaPredicted RBP3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 DNAJC22Q8N4W6 341 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 THAP8Q8NA92 274 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 OR1J1Q8NGS3 322 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 GOT1L1Q8NHS2 421 aaPredicted RBP3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 HSD17B8Q92506 261 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 THOC1Q96FV9 657 aaKnown RBP3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 THUMPD3Q9BV44 507 aaKnown RBP3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 KATNB1Q9BVA0 655 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 MIS12Q9H081 205 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 S1PR5Q9H228 398 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 FN3KQ9H479 309 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 GKN1Q9NS71 199 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 ECHDC1Q9NTX5 307 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 ZFP57Q9NU63 452 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 CHCHD3Q9NX63 227 aaKnown RBP3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 COQ3Q9NZJ6 369 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 POLLQ9UGP5 575 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 ZNF112Q9UJU3 913 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 SNX7Q9UNH6 387 aa3.77□□□□□ -1.81
HMGB1P28-201ENST00000507778 FLT1P17948 1338 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 A0A087WV48 116 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 TRAV34A0A0B4J273 112 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 HTR3EA5X5Y0 456 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 CLIC2O15247 247 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 XPNPEP2O43895 674 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 FGF17O60258 216 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 PRKRAO75569 313 aaKnown RBP3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 PIGNO95427 931 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 GBAP04062 536 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 RPN1P04843 607 aaKnown RBP3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 CSN3P07498 182 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 HAPLN1P10915 354 aaPredicted RBP3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 HSPA8P11142 646 aaKnown RBP3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 JAK1P23458 1154 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 ACAT1P24752 427 aaKnown RBP3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 MARK3P27448 753 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 MNDAP41218 407 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 UBASH3AP57075 661 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 LGALS3BPQ08380 585 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 ITGA7Q13683 1181 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 ZNF718Q3SXZ3 478 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 PHLDA2Q53GA4 152 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 SFMBT2Q5VUG0 894 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 MOXD1Q6UVY6 613 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 CIARTQ8N365 385 aaPredicted RBP3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 GRHL3Q8TE85 626 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 ATP6V1E2Q96A05 226 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 SLC47A1Q96FL8 570 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 NSL1Q96IY1 281 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 ZNF354BQ96LW1 612 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 EPYCQ99645 322 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 PSD2Q9BQI7 771 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 XAB2Q9HCS7 855 aaKnown RBP3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 A4GALTQ9NPC4 353 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 SPHK1Q9NYA1 384 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 ZDHHC2Q9UIJ5 367 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 DAPK2Q9UIK4 370 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 KCNG2Q9UJ96 466 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 POMT1Q9Y6A1 747 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 CKAP5Q14008 2032 aa3.76□□□□□ -1.81
HMGB1P28-201ENST00000507778 FAM170AA1A519 330 aa3.75□□□□□ -1.81
HMGB1P28-201ENST00000507778 EME2A4GXA9 379 aaPredicted RBP3.75□□□□□ -1.81
HMGB1P28-201ENST00000507778 ANKRD61A6NGH8 418 aa3.75□□□□□ -1.81
HMGB1P28-201ENST00000507778 DUXAA6NLW8 204 aa3.75□□□□□ -1.81
HMGB1P28-201ENST00000507778 PLOD2O00469 737 aa3.75□□□□□ -1.81
HMGB1P28-201ENST00000507778 PSMA7O14818 248 aa3.75□□□□□ -1.81
HMGB1P28-201ENST00000507778 SIX3O95343 332 aaPredicted RBP3.75□□□□□ -1.81
HMGB1P28-201ENST00000507778 MOCS3O95396 460 aa3.75□□□□□ -1.81
HMGB1P28-201ENST00000507778 PLA2G4BP0C869 781 aa3.75□□□□□ -1.81
HMGB1P28-201ENST00000507778 IRF2P14316 349 aa3.75□□□□□ -1.81
HMGB1P28-201ENST00000507778 PAX1P15863 534 aa3.75□□□□□ -1.81
HMGB1P28-201ENST00000507778 EPCAMP16422 314 aa3.75□□□□□ -1.81
HMGB1P28-201ENST00000507778 CRKLP46109 303 aaKnown RBP3.75□□□□□ -1.81
HMGB1P28-201ENST00000507778 NAGLUP54802 743 aa3.75□□□□□ -1.81
HMGB1P28-201ENST00000507778 DLX5P56178 289 aa3.75□□□□□ -1.81
HMGB1P28-201ENST00000507778 DLK1P80370 383 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms