RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	SNRNP27	Q8WVK2	155 aa	Known RBP	11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	SLC22A18	Q96BI1	424 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	SLC45A3	Q96JT2	553 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	TCF12	Q99081	682 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	RAB11FIP5	Q9BXF6	653 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	FAM117A	Q9C073	453 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	SYTL2	Q9HCH5	934 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	INTS7	Q9NVH2	962 aa	Known RBP	11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	OR6C2	Q9NZP2	312 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	MRPS18B	Q9Y676	258 aa	Known RBP	11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	MDC1	Q14676	2089 aa	Known RBP	11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	MAST4	O15021	2626 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373		A0A0J9YY10	115 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	CDC14C	A4D256	554 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	PABPN1L	A6NDY0	278 aa	Known RBP	11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	BHMG1	C9JSJ3	638 aa	Predicted RBP	11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373		E7EQ34	232 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	DNALI1	O14645	258 aa	Predicted RBP	11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	USP1	O94782	785 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	TIAF1	O95411	115 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	ESR1	P03372	595 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	FAM87A	P0C7U9	286 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	SFTPC	P11686	197 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	PKM	P14618	531 aa	Known RBP	11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	WT1	P19544	449 aa	Predicted RBP	11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	AOAH	P28039	575 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	MAGEA6	P43360	314 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	BDKRB1	P46663	353 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	RAB28	P51157	221 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	ITGA1	P56199	1179 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	DR1	Q01658	176 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	CDC20	Q12834	499 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	CTBP1	Q13363	440 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	DNASE1L3	Q13609	305 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	ERV3-1	Q14264	604 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	SF1	Q15637	639 aa	Known RBP	11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	DEFB110	Q30KQ9	67 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	DEFB109B	Q30KR1	87 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	BBS9	Q3SYG4	887 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	ARMC3	Q5W041	872 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	CAND1	Q86VP6	1230 aa	Known RBP	11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	VRK3	Q8IV63	474 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	ADGRF3	Q8IZF5	1079 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	ZBTB2	Q8N680	514 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	RAD51AP1	Q96B01	352 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	MED8	Q96G25	268 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	CFAP36	Q96G28	342 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	FCRL4	Q96PJ5	515 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	NRTN	Q99748	197 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	TRIM56	Q9BRZ2	755 aa	Known RBP	11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	FAM167B	Q9BTA0	163 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	SLC12A9	Q9BXP2	914 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	TRIM31	Q9BZY9	425 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	TWSG1	Q9GZX9	223 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	ACTR5	Q9H9F9	607 aa	Predicted RBP	11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	LHX9	Q9NQ69	397 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	FBXO6	Q9NRD1	293 aa	Predicted RBP	11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	LATS2	Q9NRM7	1088 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	TXLNG	Q9NUQ3	528 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	ABCF3	Q9NUQ8	709 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	INTS10	Q9NVR2	710 aa	Known RBP	11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	IL17B	Q9UHF5	180 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	PYCARD	Q9ULZ3	195 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	BTRC	Q9Y297	605 aa		11.15	□□□□□ -0.62
CPNE1-222	ENST00000473373	HEATR5B	Q9P2D3	2071 aa		11.15	□□□□□ -0.63
CPNE1-222	ENST00000473373		C9J4A7	227 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	NKX2-8	O15522	239 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	GPC4	O75487	556 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	WISP1	O95388	367 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	SYF2	O95926	243 aa	Known RBP	11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	HBQ1	P09105	142 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	PGAM1	P18669	254 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	AGXT	P21549	392 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	CASQ1	P31415	396 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	CCNF	P41002	786 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	NFATC3	Q12968	1075 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	PTK6	Q13882	451 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	KIR2DS3	Q14952	304 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	TBR1	Q16650	682 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	TYSND1	Q2T9J0	566 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	ZNF658B	Q4V348	819 aa	Predicted RBP	11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	CTSL3P	Q5NE16	218 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	SYDE1	Q6ZW31	735 aa	Predicted RBP	11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	PRICKLE2	Q7Z3G6	844 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	KCNMB4	Q86W47	210 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	CILP2	Q8IUL8	1156 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	DENND6A	Q8IWF6	608 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	PDIK1L	Q8N165	341 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	NAT8L	Q8N9F0	302 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	CT55	Q8WUE5	264 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	ZNF501	Q96CX3	271 aa	Predicted RBP	11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	TCTN2	Q96GX1	697 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	PDLIM2	Q96JY6	352 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	IL17F	Q96PD4	163 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	TRAPPC9	Q96Q05	1148 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	P2RY12	Q9H244	342 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	IARS2	Q9NSE4	1012 aa	Known RBP	11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	SEMA5B	Q9P283	1151 aa		11.14	□□□□□ -0.63
CPNE1-222	ENST00000473373	GPN3	Q9UHW5	284 aa	Predicted RBP	11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms