RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 PCSK5Q92824 1860 aa12.05□□□□□ -0.48
CPSF4-208ENST00000452047 NBASA2RRP1 2371 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.04□□□□□ -0.48
CPSF4-208ENST00000452047 A0A0J9YY10 115 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 E7EQ34 232 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 MKRN2OSH3BPM6 223 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 MAP3K7O43318 606 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 ZNF749O43361 778 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 RFPL1O75677 317 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 DNAJB5O75953 348 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 APOA4P06727 396 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 NR1D1P20393 614 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 MGAT1P26572 445 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 CASRP41180 1078 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 MAGEA6P43360 314 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 RAB28P51157 221 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 KCNC4Q03721 635 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 GRB7Q14451 532 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 KCNJ11Q14654 390 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 KIR2DS3Q14952 304 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 KYNUQ16719 465 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 SLC5A12Q1EHB4 618 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 DEFB110Q30KQ9 67 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 TCTN3Q6NUS6 607 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 TTC27Q6P3X3 843 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 LRRC8BQ6P9F7 803 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 UNC5DQ6UXZ4 953 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 DCUN1D3Q8IWE4 304 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 RASGEF1CQ8N431 466 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 ENDOVQ8N8Q3 282 aaKnown RBP12.04□□□□□ -0.48
CPSF4-208ENST00000452047 THAP4Q8WY91 577 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 MFSD3Q96ES6 412 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 NLNQ9BYT8 704 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 TRIM55Q9BYV6 548 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 TLK1Q9UKI8 766 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 TTC7AQ9ULT0 858 aaPredicted RBP12.04□□□□□ -0.48
CPSF4-208ENST00000452047 SOX13Q9UN79 622 aa12.04□□□□□ -0.48
CPSF4-208ENST00000452047 TNRC6AQ8NDV7 1962 aaKnown RBP12.04□□□□□ -0.48
CPSF4-208ENST00000452047 HECTD1Q9ULT8 2610 aa12.03□□□□□ -0.48
CPSF4-208ENST00000452047 KDM1AO60341 852 aa12.03□□□□□ -0.48
CPSF4-208ENST00000452047 VAPBO95292 243 aa12.03□□□□□ -0.48
CPSF4-208ENST00000452047 RPN2P04844 631 aa12.03□□□□□ -0.48
CPSF4-208ENST00000452047 CTSBP07858 339 aa12.03□□□□□ -0.48
CPSF4-208ENST00000452047 RPS3P23396 243 aaKnown RBP eCLIP12.03□□□□□ -0.48
CPSF4-208ENST00000452047 NCF4Q15080 339 aa12.03□□□□□ -0.48
CPSF4-208ENST00000452047 TRIP13Q15645 432 aaPredicted RBP12.03□□□□□ -0.48
CPSF4-208ENST00000452047 TYSND1Q2T9J0 566 aa12.03□□□□□ -0.48
CPSF4-208ENST00000452047 PTCHD3Q3KNS1 767 aa12.03□□□□□ -0.48
CPSF4-208ENST00000452047 CTSL3PQ5NE16 218 aa12.03□□□□□ -0.48
CPSF4-208ENST00000452047 FAM69BQ5VUD6 431 aa12.03□□□□□ -0.48
CPSF4-208ENST00000452047 CPZQ66K79 652 aa12.03□□□□□ -0.48
CPSF4-208ENST00000452047 PTRHD1Q6GMV3 140 aaKnown RBP12.03□□□□□ -0.48
CPSF4-208ENST00000452047 CES3Q6UWW8 571 aa12.03□□□□□ -0.48
CPSF4-208ENST00000452047 HOOK3Q86VS8 718 aa12.03□□□□□ -0.48
CPSF4-208ENST00000452047 LRRC6Q86X45 466 aa12.03□□□□□ -0.48
CPSF4-208ENST00000452047 BIRC8Q96P09 236 aa12.03□□□□□ -0.48
CPSF4-208ENST00000452047 PANX3Q96QZ0 392 aa12.03□□□□□ -0.48
CPSF4-208ENST00000452047 DPH2Q9BQC3 489 aaPredicted RBP12.03□□□□□ -0.48
CPSF4-208ENST00000452047 GNPTGQ9UJJ9 305 aa12.03□□□□□ -0.48
CPSF4-208ENST00000452047 TCFL5Q9UL49 500 aa12.03□□□□□ -0.48
CPSF4-208ENST00000452047 PTPN13Q12923 2485 aa12.02□□□□□ -0.48
CPSF4-208ENST00000452047 ISM1B1AKI9 464 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 GOLGA8KD6RF30 607 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 GOLGA8TH3BQL2 631 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 AVILO75366 819 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 OR2B3O76000 313 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 TMEM63AO94886 807 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 PDGFAP04085 211 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 HBQ1P09105 142 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 MAGP20916 626 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 CD9P21926 228 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 PTGIRP43119 386 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 VPS41P49754 854 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 GPS1Q13098 491 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 TMED2Q15363 201 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 CYP1B1Q16678 543 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 ANKRD22Q5VYY1 191 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 ARMC3Q5W041 872 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 KIAA0930Q6ICG6 404 aaPredicted RBP12.02□□□□□ -0.49
CPSF4-208ENST00000452047 RHBDD2Q6NTF9 364 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 CAND1Q86VP6 1230 aaKnown RBP12.02□□□□□ -0.49
CPSF4-208ENST00000452047 FAM20CQ8IXL6 584 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 GPR135Q8IZ08 494 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 DNAJC22Q8N4W6 341 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 LMNTD1Q8N9Z9 388 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 OR2L8Q8NGY9 312 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 CFAP61Q8NHU2 1237 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 LPGAT1Q92604 370 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 MS4A14Q96JA4 679 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 IL17FQ96PD4 163 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 SPRTNQ9H040 489 aaPredicted RBP12.02□□□□□ -0.49
CPSF4-208ENST00000452047 CIDEBQ9UHD4 219 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 SNX7Q9UNH6 387 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 NEU2Q9Y3R4 380 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 JRKLQ9Y4A0 524 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 AP1M2Q9Y6Q5 423 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 CCDC88CQ9P219 2028 aa12.02□□□□□ -0.49
CPSF4-208ENST00000452047 RASGRF2O14827 1237 aa12.01□□□□□ -0.49
CPSF4-208ENST00000452047 KPNA5O15131 536 aa12.01□□□□□ -0.49
CPSF4-208ENST00000452047 ZSCAN9O15535 394 aaPredicted RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms