RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 PTERQ96BW5 349 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 ZNF583Q96ND8 569 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 ZNF599Q96NL3 588 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 GDF15Q99988 308 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 MIR1-1HGQ9H1L0 117 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 MINDY3Q9H8M7 445 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 POPDC3Q9HBV1 291 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 GLOD4Q9HC38 313 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 ACOXLQ9NUZ1 547 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 POLR3BQ9NW08 1133 aaPredicted RBP10.62□□□□□ -0.71
UPF3A-212ENST00000619079 DERAQ9Y315 318 aa10.62□□□□□ -0.71
UPF3A-212ENST00000619079 C17orf102A2RUQ5 167 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 ERVH48-1M5A8F1 160 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 PPP6CO00743 305 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 CD3EAPO15446 510 aaKnown RBP10.61□□□□□ -0.71
UPF3A-212ENST00000619079 SLC7A4O43246 635 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 HBP1O60381 514 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 RECQL5O94762 991 aaPredicted RBP10.61□□□□□ -0.71
UPF3A-212ENST00000619079 SIX3O95343 332 aaPredicted RBP10.61□□□□□ -0.71
UPF3A-212ENST00000619079 UROSP10746 265 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 IL7P13232 177 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 TIE1P35590 1138 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 MAGEA11P43364 429 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 OR3A3P47888 321 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 SCNN1GP51170 649 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 YWHAHQ04917 246 aaPredicted RBP10.61□□□□□ -0.71
UPF3A-212ENST00000619079 TARDBPQ13148 414 aaKnown RBP eCLIP10.61□□□□□ -0.71
UPF3A-212ENST00000619079 LAPTM5Q13571 262 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 TBCEQ15813 527 aaPredicted RBP10.61□□□□□ -0.71
UPF3A-212ENST00000619079 LRRC26Q2I0M4 334 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 ZNF789Q5FWF6 425 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 ANKS6Q68DC2 871 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 SLC51BQ86UW2 128 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 NLGN4XQ8N0W4 816 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 GALNT6Q8NCL4 622 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 ZNF548Q8NEK5 533 aaPredicted RBP10.61□□□□□ -0.71
UPF3A-212ENST00000619079 PROKR1Q8TCW9 393 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 C18orf25Q96B23 403 aaPredicted RBP10.61□□□□□ -0.71
UPF3A-212ENST00000619079 TBC1D20Q96BZ9 403 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 TTYH2Q9BSA4 534 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 DPEP3Q9H4B8 488 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 RIBC2Q9H4K1 309 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 TFB2MQ9H5Q4 396 aaKnown RBP10.61□□□□□ -0.71
UPF3A-212ENST00000619079 CARS2Q9HA77 564 aaKnown RBP10.61□□□□□ -0.71
UPF3A-212ENST00000619079 TRIM39Q9HCM9 518 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 ATP13A2Q9NQ11 1180 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 FKBP14Q9NWM8 211 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 FBXW11Q9UKB1 542 aa10.61□□□□□ -0.71
UPF3A-212ENST00000619079 ZBTB42B2RXF5 422 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 ARVCFO00192 962 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 ARHGEF9O43307 516 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 DFNA5O60443 496 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 SEMA3DO95025 777 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 PAPSS2O95340 614 aaPredicted RBP10.6□□□□□ -0.71
UPF3A-212ENST00000619079 MLYCDO95822 493 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 MT-CYBP00156 380 aaPredicted RBP10.6□□□□□ -0.71
UPF3A-212ENST00000619079 LCKP06239 509 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 INSRRP14616 1297 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 POLR2CP19387 275 aaPredicted RBP10.6□□□□□ -0.71
UPF3A-212ENST00000619079 PRKACGP22612 351 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 TGFBR1P36897 503 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 CDKN2DP55273 166 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 ELP6Q0PNE2 266 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 MAD2L1BPQ15013 274 aaPredicted RBP10.6□□□□□ -0.71
UPF3A-212ENST00000619079 GRIK4Q16099 956 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 NKG7Q16617 165 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 TWF2Q6IBS0 349 aaKnown RBP10.6□□□□□ -0.71
UPF3A-212ENST00000619079 SLC39A5Q6ZMH5 540 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 CCDC190Q86UF4 302 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 CACTIN-AS1Q8N1I8 211 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 CADM2Q8N3J6 435 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 OR52K2Q8NGK3 314 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 TRAPPC12Q8WVT3 735 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 RNF170Q96K19 258 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 CEP19Q96LK0 163 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 DMRTB1Q96MA1 342 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 SIGLEC11Q96RL6 698 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 ZNF717Q9BY31 904 aaPredicted RBP10.6□□□□□ -0.71
UPF3A-212ENST00000619079 ITM2CQ9NQX7 267 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 RGS18Q9NS28 235 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 TOR4AQ9NXH8 423 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 CFL2Q9Y281 166 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 NME7Q9Y5B8 376 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 FRMPD3Q5JV73 1810 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 ELOVL7A1L3X0 281 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 HAS3O00219 553 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 DSCR3O14972 297 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 COL6A1P12109 1028 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 ERP29P30040 261 aaKnown RBP10.6□□□□□ -0.71
UPF3A-212ENST00000619079 AP2S1P53680 142 aaPredicted RBP10.6□□□□□ -0.71
UPF3A-212ENST00000619079 RAD51Q06609 339 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 HSPA14Q0VDF9 509 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 TRIM60Q495X7 471 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 ARMC4Q5T2S8 1044 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 NXNL2Q5VZ03 156 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 FAM219BQ5XKK7 198 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 TMEM207Q6UWW9 146 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 UTS2BQ765I0 119 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 ATPAF2Q8N5M1 289 aa10.6□□□□□ -0.71
UPF3A-212ENST00000619079 FNDC5Q8NAU1 212 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms