RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	ARCN1	P48444	511 aa	Known RBP	13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	RRAD	P55042	308 aa		13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	BASP1	P80723	227 aa	Known RBP	13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	SNX1	Q13596	522 aa		13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	NAA25	Q14CX7	972 aa		13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	SLC5A12	Q1EHB4	618 aa		13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	MRNIP	Q6NTE8	343 aa		13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	DCUN1D3	Q8IWE4	304 aa		13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	DSEL	Q8IZU8	1212 aa		13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	C19orf47	Q8N9M1	422 aa	Known RBP	13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	PHC3	Q8NDX5	983 aa		13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	OR13J1	Q8NGT2	312 aa		13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	PROKR1	Q8TCW9	393 aa		13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	TRAPPC9	Q96Q05	1148 aa		13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	NAP1L3	Q99457	506 aa	Predicted RBP	13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	CARD6	Q9BX69	1037 aa		13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	LZTFL1	Q9NQ48	299 aa		13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	ACSS2	Q9NR19	701 aa		13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	TDRKH	Q9Y2W6	561 aa	Known RBP	13.64	□□□□□ -0.23
TPM1-223	ENST00000560445	MRPS18B	Q9Y676	258 aa	Known RBP	13.64	□□□□□ -0.23
TPM1-223	ENST00000560445		A0A0J9YY10	115 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	SLC5A10	A0PJK1	596 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	BTN3A3	O00478	584 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	FGG	P02679	453 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	ST6GAL1	P15907	406 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	F8A1	P23610	371 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	ACADL	P28330	430 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	RAB28	P51157	221 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	TLE1	Q04724	770 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	PRKG2	Q13237	762 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	PTRHD1	Q6GMV3	140 aa	Known RBP	13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	TLDC1	Q6P9B6	456 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	ZNF517	Q6ZMY9	492 aa	Predicted RBP	13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	RAB43	Q86YS6	212 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	LRRC8A	Q8IWT6	810 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	SLC22A15	Q8IZD6	547 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	ADGRF3	Q8IZF5	1079 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	OTUD6B	Q8N6M0	293 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	TEX19	Q8NA77	164 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	OR5AR1	Q8NGP9	310 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	MAGEC3	Q8TD91	643 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	NAT14	Q8WUY8	206 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	DLG3	Q92796	817 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	FOPNL	Q96NB1	174 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	MRM3	Q9HC36	420 aa	Known RBP	13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	GPN3	Q9UHW5	284 aa	Predicted RBP	13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	ICK	Q9UPZ9	632 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	PCDHGB7	Q9Y5F8	929 aa		13.63	□□□□□ -0.23
TPM1-223	ENST00000560445	ASH1L	Q9NR48	2969 aa	Known RBP	13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	CD3EAP	O15446	510 aa	Known RBP	13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	NDUFS3	O75489	264 aa		13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	OR2B3	O76000	313 aa		13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	S1PR4	O95977	384 aa		13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	CHRM5	P08912	532 aa	Predicted RBP	13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	UGT2B7	P16662	529 aa		13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	TPSB2	P20231	275 aa		13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	CCNF	P41002	786 aa		13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	PGD	P52209	483 aa		13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	HSPA14	Q0VDF9	509 aa		13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	GPS2	Q13227	327 aa		13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	TPSAB1	Q15661	275 aa		13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	UNC5A	Q6ZN44	842 aa		13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	ASB18	Q6ZVZ8	466 aa		13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	OTOA	Q7RTW8	1153 aa		13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	ATCAY	Q86WG3	371 aa		13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	PTRH1	Q86Y79	214 aa	Known RBP	13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	SYTL1	Q8IYJ3	562 aa		13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	TCF12	Q99081	682 aa		13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	CHST8	Q9H2A9	424 aa		13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	ZNF71	Q9NQZ8	489 aa	Predicted RBP	13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	TXLNG	Q9NUQ3	528 aa		13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	IRAK4	Q9NWZ3	460 aa		13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	SLC39A10	Q9ULF5	831 aa		13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	PCDHGA9	Q9Y5G4	932 aa	Known RBP	13.62	□□□□□ -0.23
TPM1-223	ENST00000560445	OR51F1	A6NGY5	319 aa		13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	ISM1	B1AKI9	464 aa		13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	CEP104	O60308	925 aa		13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	PRSS56	P0CW18	603 aa		13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	PIM1	P11309	404 aa	Predicted RBP	13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	RPS3	P23396	243 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	VARS	P26640	1264 aa	Known RBP	13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	RPL22	P35268	128 aa	Known RBP	13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	RORA	P35398	523 aa		13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	SESN2	P58004	480 aa	Predicted RBP	13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	NFKB2	Q00653	900 aa		13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	BRD3	Q15059	726 aa		13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	NCF4	Q15080	339 aa		13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	ZC3H12B	Q5HYM0	836 aa	Known RBP	13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	PLEKHS1	Q5SXH7	462 aa		13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	ATP1A1-AS1	Q5TC04	95 aa		13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	MED25	Q71SY5	747 aa		13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	TMEM102	Q8N9M5	508 aa	Predicted RBP	13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	OR1L3	Q8NH93	324 aa		13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	GABPB2	Q8TAK5	448 aa	Predicted RBP	13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	VPS50	Q96JG6	964 aa		13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	NDC1	Q9BTX1	674 aa		13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	AP1M1	Q9BXS5	423 aa		13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	XKR8	Q9H6D3	395 aa		13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	SAMD15	Q9P1V8	674 aa		13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms