RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 FYNP06241 537 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 HOXB5P09067 269 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 ELFN1P0C7U0 828 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 APEHP13798 732 aaKnown RBP3.78□□□□□ -1.8
LIMA1-208ENST00000551691 GJA1P17302 382 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 PTPN2P17706 415 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 EPHB2P29323 1055 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 TACR3P29371 465 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 GP5P40197 560 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 PTGER3P43115 390 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 AVPR1BP47901 424 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 NOVP48745 357 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 DHPSP49366 369 aaPredicted RBP3.78□□□□□ -1.8
LIMA1-208ENST00000551691 CRYBB1P53674 252 aaPredicted RBP3.78□□□□□ -1.8
LIMA1-208ENST00000551691 PMS2P54278 862 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 HDAC4P56524 1084 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 SEMG2Q02383 582 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 SCN1BQ07699 218 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 MTA1Q13330 715 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 SNTB1Q13884 538 aaKnown RBP3.78□□□□□ -1.8
LIMA1-208ENST00000551691 FGFBP1Q14512 234 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 KRT33BQ14525 404 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 ME3Q16798 604 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 CCDC142Q17RM4 750 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 RNASE12Q5GAN4 147 aaKnown RBP3.78□□□□□ -1.8
LIMA1-208ENST00000551691 LY6G5CQ5SRR4 150 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 CST9LP1Q5W188 147 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 KRT39Q6A163 491 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 MDGA2Q7Z553 956 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 PEG10Q86TG7 708 aaKnown RBP3.78□□□□□ -1.8
LIMA1-208ENST00000551691 TMC8Q8IU68 726 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 DPP10Q8N608 796 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 RASSF8Q8NHQ8 419 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 GDAP1Q8TB36 358 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 ACTRT2Q8TDY3 377 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 FAR1Q8WVX9 515 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 SEPT1Q8WYJ6 367 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 ELSPBP1Q96BH3 223 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 CCDC114Q96M63 670 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 LRRC3BQ96PB8 259 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 DGAT2Q96PD7 388 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 FRG2BQ96QU4 278 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 GAD1Q99259 594 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 FERMT1Q9BQL6 677 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 SRSF8Q9BRL6 282 aaKnown RBP3.78□□□□□ -1.8
LIMA1-208ENST00000551691 GPATCH1Q9BRR8 931 aaKnown RBP3.78□□□□□ -1.8
LIMA1-208ENST00000551691 PLEKHA4Q9H4M7 779 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 CXorf56Q9H5V9 222 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 RETREG1Q9H6L5 497 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 CYP4F11Q9HBI6 524 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 Q9N2J8 555 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 SERTAD4Q9NUC0 356 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 MARCH5Q9NX47 278 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 MIOSQ9NXC5 875 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 PLK2Q9NYY3 685 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 GTSE1Q9NYZ3 720 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 GRHL1Q9NZI5 618 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 CACNG4Q9UBN1 327 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 MRPL11Q9Y3B7 192 aaKnown RBP3.78□□□□□ -1.8
LIMA1-208ENST00000551691 CCL27Q9Y4X3 112 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 POMT1Q9Y6A1 747 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 AHCTF1Q8WYP5 2266 aa3.78□□□□□ -1.8
LIMA1-208ENST00000551691 MTCL1Q9Y4B5 1905 aaKnown RBP3.78□□□□□ -1.81
LIMA1-208ENST00000551691 PLIN4Q96Q06 1357 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 LRRK2Q5S007 2527 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 A0A096LPK6 155 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 TARSL2A2RTX5 802 aaKnown RBP3.77□□□□□ -1.81
LIMA1-208ENST00000551691 CXorf65A6NEN9 183 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 TMEM200CA6NKL6 621 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 LINC00473A8K010 186 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 ZNF263O14978 683 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 PRPF4O43172 522 aaKnown RBP eCLIP3.77□□□□□ -1.81
LIMA1-208ENST00000551691 GPAA1O43292 621 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 SEC14L5O43304 696 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 HCRTR2O43614 444 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 MT-CYBP00156 380 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-208ENST00000551691 HEXAP06865 529 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 TPOP07202 933 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 HNRNPCP07910 306 aaKnown RBP eCLIP3.77□□□□□ -1.81
LIMA1-208ENST00000551691 RFPL3SP0C7P2 107 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 TFPIP10646 304 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 TOP1P11387 765 aaKnown RBP3.77□□□□□ -1.81
LIMA1-208ENST00000551691 ATP5F1P24539 256 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-208ENST00000551691 U2AF2P26368 475 aaKnown RBP eCLIP3.77□□□□□ -1.81
LIMA1-208ENST00000551691 PON1P27169 355 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 CCR2P41597 374 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 GRIA3P42263 894 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 OR1G1P47890 313 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 CLCNKBP51801 687 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 PPP5CP53041 499 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 CSE1LP55060 971 aaKnown RBP3.77□□□□□ -1.81
LIMA1-208ENST00000551691 NLRP11P59045 1033 aaKnown RBP3.77□□□□□ -1.81
LIMA1-208ENST00000551691 CCDC173Q0VFZ6 552 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 SLC14A1Q13336 389 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 PCLAFQ15004 111 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 LARS2Q15031 903 aaKnown RBP3.77□□□□□ -1.81
LIMA1-208ENST00000551691 PTPAQ15257 358 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 ASTE1Q2TB18 679 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-208ENST00000551691 ALG10Q5BKT4 473 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 ALG10BQ5I7T1 473 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms