RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 PCDHB14Q9Y5E9 798 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 KDELR3O43731 214 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 NADKO95544 446 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 PSMB9P28065 219 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 ATP5C1P36542 298 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 SLC11A2P49281 568 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 GATMP50440 423 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 VBP1P61758 197 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 SFSWAPQ12872 951 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 ILF2Q12905 390 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 CDK5R2Q13319 367 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 MAPK11Q15759 364 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 SMN1Q16637 294 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 OR7A2PQ8NGA2 310 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 MCOLN3Q8TDD5 553 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 UBE2FQ969M7 185 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 ZNF347Q96SE7 839 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 INPP5KQ9BT40 448 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 LRTM1Q9HBL6 345 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 MTRRQ9UBK8 725 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 CCL27Q9Y4X3 112 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 PRSS21Q9Y6M0 314 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 SOBPA7XYQ1 873 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 BCKDKO14874 412 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 F11P03951 625 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 RING1Q06587 406 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 DSC1Q08554 894 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 PGS1Q32NB8 556 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 RUNDC3AQ59EK9 446 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 CACHD1Q5VU97 1274 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 TMEM236Q5W0B7 351 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 ALG1LQ6GMV1 187 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 LRRC8DQ7L1W4 858 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 CYP4Z1Q86W10 505 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 SERPINA9Q86WD7 417 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 RORBQ92753 470 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 ALOXE3Q9BYJ1 711 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 ASB8Q9H765 288 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 IL17CQ9P0M4 197 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 PNMA8BQ9ULN7 279 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 FCF1Q9Y324 198 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 ORC6Q9Y5N6 252 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 KRBA1A5PL33 1030 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 H3BNC9 293 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 GKP32189 559 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 EIF2B2P49770 351 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 CLCN4P51793 760 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 KPNA1P52294 538 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 DNASE1L3Q13609 305 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 CTF1Q16619 201 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 RASAL3Q86YV0 1011 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 OR5K1Q8NHB7 308 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 NDNFQ8TB73 568 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 WBP2Q969T9 261 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 MUL1Q969V5 352 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 PRDM8Q9NQV8 689 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 RASSF1Q9NS23 344 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 IL37Q9NZH6 218 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 TMEFF2Q9UIK5 374 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 VPS4AQ9UN37 437 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 DLGAP4Q9Y2H0 992 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 TRIM17Q9Y577 477 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 CPQQ9Y646 472 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 ZNF99A8MXY4 864 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 AREL1O15033 823 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 PER2O15055 1255 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 NBNO60934 754 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 HPRP00739 348 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 TACR1P25103 407 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 MZF1P28698 734 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 GSSP48637 474 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 CDH4P55283 916 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 IFITM3Q01628 133 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 EGLN2Q96KS0 407 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 PARVBQ9HBI1 364 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 PRM3Q9NNZ6 103 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 DCAF13Q9NV06 445 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 ENPP5Q9UJA9 477 aa9.06□□□□□ -0.96
LIMCH1-215ENST00000512632 GLTPD2A6NH11 291 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 hCG_2039718K7EN88 272 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 K7ERQ8 282 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 SCELO95171 688 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 PRAMEF1O95521 474 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 BCKDHAP12694 445 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 RPL17P18621 184 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 EPHA2P29317 976 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 TGFBR1P36897 503 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 HALP42357 657 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 MAGEA8P43361 318 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 MAGEA11P43364 429 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 NCS1P62166 190 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 ARF5P84085 180 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 NPTX1Q15818 432 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 ADPRMQ3LIE5 342 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 NIPAL1Q6NVV3 410 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 PRR23BQ6ZRT6 265 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 AADATQ8N5Z0 425 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 PJA1Q8NG27 643 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 FAR1Q8WVX9 515 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 FAM126AQ9BYI3 521 aaPredicted RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms