RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 PRKAA1Q13131 559 aa17.56■□□□□ 0.4
COL9A3-214ENST00000490398 COL9A2Q14055 689 aaPredicted RBP17.56■□□□□ 0.4
COL9A3-214ENST00000490398 IL11RAQ14626 422 aa17.56■□□□□ 0.4
COL9A3-214ENST00000490398 PRAMEF17Q5VTA0 474 aa17.56■□□□□ 0.4
COL9A3-214ENST00000490398 ZNF470Q6ECI4 717 aa17.56■□□□□ 0.4
COL9A3-214ENST00000490398 ZNF549Q6P9A3 640 aa17.56■□□□□ 0.4
COL9A3-214ENST00000490398 SDCCAG8Q86SQ7 713 aaPredicted RBP17.56■□□□□ 0.4
COL9A3-214ENST00000490398 RASGRP3Q8IV61 690 aa17.56■□□□□ 0.4
COL9A3-214ENST00000490398 C2orf73Q8N5S3 287 aaPredicted RBP17.56■□□□□ 0.4
COL9A3-214ENST00000490398 ASZ1Q8WWH4 475 aa17.56■□□□□ 0.4
COL9A3-214ENST00000490398 ZNF501Q96CX3 271 aaPredicted RBP17.56■□□□□ 0.4
COL9A3-214ENST00000490398 SLC30A3Q99726 388 aa17.56■□□□□ 0.4
COL9A3-214ENST00000490398 WDR83Q9BRX9 315 aaKnown RBP17.56■□□□□ 0.4
COL9A3-214ENST00000490398 PITPNM3Q9BZ71 974 aa17.56■□□□□ 0.4
COL9A3-214ENST00000490398 ULBP3Q9BZM4 244 aa17.56■□□□□ 0.4
COL9A3-214ENST00000490398 TWSG1Q9GZX9 223 aa17.56■□□□□ 0.4
COL9A3-214ENST00000490398 IL17BQ9UHF5 180 aa17.56■□□□□ 0.4
COL9A3-214ENST00000490398 MED16Q9Y2X0 877 aa17.56■□□□□ 0.4
COL9A3-214ENST00000490398 MAGEB16A2A368 324 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 HCRTR1O43613 425 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 ZBTB11O95625 1053 aaPredicted RBP17.55■□□□□ 0.4
COL9A3-214ENST00000490398 APOA4P06727 396 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 UGT2B7P16662 529 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 SLC1A2P43004 574 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 ARL4DP49703 201 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 ATP1A2P50993 1020 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 MPP1Q00013 466 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 DR1Q01658 176 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 PLOD1Q02809 727 aaPredicted RBP17.55■□□□□ 0.4
COL9A3-214ENST00000490398 ZIC1Q15915 447 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 DNAJC21Q5F1R6 531 aaKnown RBP17.55■□□□□ 0.4
COL9A3-214ENST00000490398 HP1BP3Q5SSJ5 553 aaPredicted RBP17.55■□□□□ 0.4
COL9A3-214ENST00000490398 LRRC6Q86X45 466 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 PPP1R3BQ86XI6 285 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 KMT5CQ86Y97 462 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 LINC01555Q8NAE3 123 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 STAMBPL1Q96FJ0 436 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 TRAPPC9Q96Q05 1148 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 OR2A14Q96R47 310 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 TCF12Q99081 682 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 TSSK1BQ9BXA7 367 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 C1GALT1Q9NS00 363 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 FGF21Q9NSA1 209 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 KCND1Q9NSA2 647 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 C20orf96Q9NUD7 363 aaPredicted RBP17.55■□□□□ 0.4
COL9A3-214ENST00000490398 SOHLH2Q9NX45 425 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 LNPEPQ9UIQ6 1025 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 BTRCQ9Y297 605 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 MRPS18BQ9Y676 258 aaKnown RBP17.55■□□□□ 0.4
COL9A3-214ENST00000490398 BOD1L1Q8NFC6 3051 aa17.55■□□□□ 0.4
COL9A3-214ENST00000490398 PIPSLA2A3N6 862 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 C2orf74A8MZ97 194 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 ATXN7O15265 892 aaPredicted RBP17.54■□□□□ 0.4
COL9A3-214ENST00000490398 USP1O94782 785 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 NTRK1P04629 796 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 CTSBP07858 339 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 CHRM5P08912 532 aaPredicted RBP17.54■□□□□ 0.4
COL9A3-214ENST00000490398 PKMP14618 531 aaKnown RBP17.54■□□□□ 0.4
COL9A3-214ENST00000490398 PAMP19021 973 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 MAP4P27816 1152 aaKnown RBP17.54■□□□□ 0.4
COL9A3-214ENST00000490398 PKLRP30613 574 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 SHMT2P34897 504 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 BDKRB1P46663 353 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 GBX1Q14549 363 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.54■□□□□ 0.4
COL9A3-214ENST00000490398 HSP90AA5PQ58FG0 334 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 ACSBG2Q5FVE4 666 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 ARMC3Q5W041 872 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 SPESP1Q6UW49 350 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 SLC38A9Q8NBW4 561 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 GIMAP7Q8NHV1 300 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 PANX3Q96QZ0 392 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 RUFY1Q96T51 708 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 KRT12Q99456 494 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 SLC12A9Q9BXP2 914 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 TRIM31Q9BZY9 425 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 SEMA4CQ9C0C4 833 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 FAM60AQ9NP50 221 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 SLC17A6Q9P2U8 582 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 POLG2Q9UHN1 485 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 RARRES3Q9UL19 164 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 KLHL20Q9Y2M5 609 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 PIEZO2Q9H5I5 2752 aa17.54■□□□□ 0.4
COL9A3-214ENST00000490398 F8W8V4 182 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 TERTO14746 1132 aaKnown RBP17.53■□□□□ 0.4
COL9A3-214ENST00000490398 NKX2-8O15522 239 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 ESR1P03372 595 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 STAT5AP42229 794 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 TUBB4BP68371 445 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 RHDQ02161 417 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 ACY1Q03154 408 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 THOC5Q13769 683 aaKnown RBP17.53■□□□□ 0.4
COL9A3-214ENST00000490398 TUBB2AQ13885 445 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 LY6DQ14210 128 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 CRYMQ14894 314 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 KYNUQ16719 465 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 LONRF1Q17RB8 773 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 LINC00303Q3SY05 128 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 BBS9Q3SYG4 887 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 RNF187Q5TA31 235 aaPredicted RBP17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms