RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 PRKCIP41743 596 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 SYKP43405 635 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 CCR10P46092 362 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 GPR4P46093 362 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 SLC26A2P50443 739 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 SERPINB9P50453 376 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 CLCN5P51795 746 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 FMO1Q01740 532 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 GPR176Q14439 515 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 PTPRRQ15256 657 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 CEBPEQ15744 281 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 RAB30Q15771 203 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 PLA1AQ53H76 456 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 LRRC38Q5VT99 294 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 C18orf63Q68DL7 685 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 C3orf33Q6P1S2 294 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 CRELD2Q6UXH1 353 aaPredicted RBP5.32□□□□□ -1.56
VPS41-209ENST00000457055 ZNF365Q70YC5 407 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 FRA10AC1Q70Z53 315 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 KCTD9Q7L273 389 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 USP37Q86T82 979 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 LDLRAD3Q86YD5 345 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 ZNF573Q86YE8 665 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 TMPRSS6Q8IU80 811 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 GHDCQ8N2G8 530 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 COMMD1Q8N668 190 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 NATD1Q8N6N6 113 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 PPFIBP2Q8ND30 876 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 NSMCE1Q8WV22 266 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 WDR60Q8WVS4 1066 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 PRPF31Q8WWY3 499 aaKnown RBP5.32□□□□□ -1.56
VPS41-209ENST00000457055 NELFBQ8WX92 580 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 ING5Q8WYH8 240 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 LARP4BQ92615 738 aaKnown RBP5.32□□□□□ -1.56
VPS41-209ENST00000457055 LPPQ93052 612 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 SPSB4Q96A44 273 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 EID2BQ96D98 161 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 ZNF558Q96NG5 402 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 C11orf70Q9BRQ4 267 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 SPATA16Q9BXB7 569 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 TLR10Q9BXR5 811 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 FRMD8Q9BZ67 464 aaPredicted RBP5.32□□□□□ -1.56
VPS41-209ENST00000457055 TRIM31Q9BZY9 425 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 VCX3AQ9NNX9 186 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 LTB4R2Q9NPC1 389 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 CHRAC1Q9NRG0 131 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 PARPBPQ9NWS1 579 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 NDE1Q9NXR1 346 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 KCNN3Q9UGI6 736 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 ZNHIT2Q9UHR6 403 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 TUBD1Q9UJT1 453 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 GMEB2Q9UKD1 530 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 DNAJC16Q9Y2G8 782 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 IFT52Q9Y366 437 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 NR2E3Q9Y5X4 410 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 NFS1Q9Y697 457 aa5.32□□□□□ -1.56
VPS41-209ENST00000457055 NUP155O75694 1391 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 NPC1L1Q9UHC9 1359 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 A0A088AWK7 358 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 A0A1W2PRX2 142 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 GLOD5A6NK44 160 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 TRPC5OSA6NMA1 111 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 MEI4A8MW99 385 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 C2orf74A8MZ97 194 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 PHGDHO43175 533 aaKnown RBP5.31□□□□□ -1.56
VPS41-209ENST00000457055 CHMP2AO43633 222 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 GPC4O75487 556 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 RECQL5O94762 991 aaPredicted RBP5.31□□□□□ -1.56
VPS41-209ENST00000457055 ONECUT2O95948 504 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 KRT16P08779 473 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 STAG3L2P0CL84 134 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 OR8G3PP0DMU2 310 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 SRCP12931 536 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 OSMP13725 252 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 ITGAXP20702 1163 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 NT5EP21589 574 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 SLC8A1P32418 973 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 CRATP43155 626 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 ARFIP2P53365 341 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 ATP2C1P98194 919 aaPredicted RBP5.31□□□□□ -1.56
VPS41-209ENST00000457055 SRSF2Q01130 221 aaKnown RBP5.31□□□□□ -1.56
VPS41-209ENST00000457055 PLOD1Q02809 727 aaPredicted RBP5.31□□□□□ -1.56
VPS41-209ENST00000457055 PPP3CAQ08209 521 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 TRAF2Q12933 501 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 SNTB2Q13425 540 aaKnown RBP5.31□□□□□ -1.56
VPS41-209ENST00000457055 FASTKD3Q14CZ7 662 aaKnown RBP5.31□□□□□ -1.56
VPS41-209ENST00000457055 NOMO1Q15155 1222 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 HKDC1Q2TB90 917 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 XKR4Q5GH76 650 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 RAB41Q5JT25 222 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 LCN1P1Q5VSP4 162 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 RAET1GQ6H3X3 334 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 TTC27Q6P3X3 843 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 IL20RBQ6UXL0 311 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 SCARA5Q6ZMJ2 495 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 RFPL4BQ6ZWI9 263 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 ERN2Q76MJ5 926 aaKnown RBP5.31□□□□□ -1.56
VPS41-209ENST00000457055 BHLHA15Q7RTS1 189 aaPredicted RBP5.31□□□□□ -1.56
VPS41-209ENST00000457055 SYVN1Q86TM6 617 aa5.31□□□□□ -1.56
VPS41-209ENST00000457055 RTN4RL1Q86UN2 441 aaPredicted RBP5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms