RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 CEP290O15078 2479 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 C16orf96A6NNT2 1141 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 SLC28A1O00337 649 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 FZD6O60353 706 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 ZBTB11O95625 1053 aaPredicted RBP16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 BCL10O95999 233 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 HTR1AP08908 422 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 IMPDH2P12268 514 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 PIGAP37287 484 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 NRIP1P48552 1158 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 FPGSQ05932 587 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 PPIGQ13427 754 aaKnown RBP eCLIP16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 MAPKAPK3Q16644 382 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 FAM174BQ3ZCQ3 159 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 C6orf141Q5SZD1 244 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 PDZD8Q8NEN9 1154 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 ZNF555Q8NEP9 628 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 BPIFB6Q8NFQ5 453 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 UBTD2Q8WUN7 234 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 SGCDQ92629 289 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 COX4I2Q96KJ9 171 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 RBM4BQ9BQ04 359 aaKnown RBP16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 RBM4Q9BWF3 364 aaKnown RBP16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 NACA2Q9H009 215 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 SPG21Q9NZD8 308 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 CXXC1Q9P0U4 656 aaPredicted RBP16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 AP3M1Q9Y2T2 418 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 BACE2Q9Y5Z0 518 aa16.06■□□□□ 0.16
CLCNKA-203ENST00000439316 TRBV5-3A0A0A0MS03 114 aa16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 ELOVL7A1L3X0 281 aa16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 CXCR6O00574 342 aa16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 WDR47O94967 919 aa16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 PRAMEF12O95522 483 aa16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 CORO1AP31146 461 aaKnown RBP16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 PLA2G16P53816 162 aa16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 CTU2Q2VPK5 515 aaKnown RBP16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 RUNDC3AQ59EK9 446 aa16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 SPANXN4Q5MJ08 99 aa16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 PTRHD1Q6GMV3 140 aaKnown RBP16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 HS3ST5Q8IZT8 346 aa16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 DDHD1Q8NEL9 900 aa16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 LKAAEAR1Q8TD35 194 aa16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 CSF3RQ99062 836 aa16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 CLSTN3Q9BQT9 956 aa16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 THUMPD3Q9BV44 507 aaKnown RBP16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 FAM126AQ9BYI3 521 aaPredicted RBP16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 DPY30Q9C005 99 aa16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 CIPCQ9C0C6 399 aa16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 CLMPQ9H6B4 373 aa16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 EVLQ9UI08 416 aaPredicted RBP16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 GNPTGQ9UJJ9 305 aa16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 UTS2RQ9UKP6 389 aa16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 BLOC1S6Q9UL45 172 aa16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 PDE10AQ9Y233 779 aa16.05■□□□□ 0.16
CLCNKA-203ENST00000439316 COCHO43405 550 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 STC2O76061 302 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 IL6P05231 212 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 PGRP06401 933 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 RETP07949 1114 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 HMGCLP35914 325 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 KCNAB2Q13303 367 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 LAIR2Q6ISS4 152 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 LINGO4Q6UY18 593 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 DCDC5Q6ZRR9 648 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 TRIM46Q7Z4K8 759 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 GPR149Q86SP6 731 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 RBM23Q86U06 439 aaKnown RBP16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 SERPINA9Q86WD7 417 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 PLPP6Q8IY26 295 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 MICU2Q8IYU8 434 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 C7orf61Q8IZ16 206 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 LIX1Q8N485 282 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 TRUB1Q8WWH5 349 aaKnown RBP16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 MUL1Q969V5 352 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 FAM162AQ96A26 154 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 RHBDF1Q96CC6 855 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 SH3GL1Q99961 368 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 CLPBQ9H078 707 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 MAGIXQ9H6Y5 334 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 MAGEE1Q9HCI5 957 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 LTB4R2Q9NPC1 389 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 NAALAD2Q9Y3Q0 740 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 LAMA3Q16787 3333 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 CHD7Q9P2D1 2997 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 ZNF840PA6NDX5 716 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 FAM220BPB1ANY3 271 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 GAPDHSO14556 408 aaPredicted RBP16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 ZSCAN9O15535 394 aaPredicted RBP16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 NOBOXO60393 691 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 CLPXO76031 633 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 PRKD3O94806 890 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 GUCA1CO95843 209 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 ZNF7P17097 686 aaPredicted RBP16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 RGS4P49798 205 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 CD47Q08722 323 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 TWF1Q12792 350 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 TOP3AQ13472 1001 aaPredicted RBP16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 LAPTM5Q13571 262 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 MEP1AQ16819 746 aa16.04■□□□□ 0.16
CLCNKA-203ENST00000439316 CACHD1Q5VU97 1274 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 136.4 ms