RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 UGT1A6P19224 532 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 MSH3P20585 1137 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 UGT1A1P22309 533 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 UGT1A4P22310 534 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 ALDH4A1P30038 563 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 UGT1A3P35503 534 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 POLD2P49005 469 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 CDKN1CP49918 316 aaPredicted RBP11.89□□□□□ -0.51
PTPRF-208ENST00000437607 GTF2H3Q13889 308 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 GPRC6AQ5T6X5 926 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 CNSTQ6PJW8 725 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 HEATR4Q86WZ0 1026 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 SRRM1Q8IYB3 904 aaKnown RBP11.89□□□□□ -0.51
PTPRF-208ENST00000437607 NAGSQ8N159 534 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 HEXDCQ8WVB3 486 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 LPGAT1Q92604 370 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 NKD1Q969G9 470 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 GLYATL1Q969I3 302 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 TSPAN17Q96FV3 270 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 ATP6V1G3Q96LB4 118 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 CCDC74BQ96LY2 380 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 TMEM9Q9P0T7 183 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 SLC39A10Q9ULF5 831 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 SUFUQ9UMX1 484 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 PLEKHM1Q9Y4G2 1056 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 PRRC2CQ9Y520 2896 aaKnown RBP11.89□□□□□ -0.51
PTPRF-208ENST00000437607 USP9XQ93008 2570 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-208ENST00000437607 TEX15Q9BXT5 2789 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 RHPN2P1A8MT19 583 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 E5RI56 91 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 H3BMM5 538 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 STMND1H3BQB6 276 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 QSOX1O00391 747 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 HGSO14964 777 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-208ENST00000437607 PPM1DO15297 605 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 INPP4BO15327 924 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 HAUS5O94927 633 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 SLC25A14O95258 325 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-208ENST00000437607 S1PR4O95977 384 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 SOD1P00441 154 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 AHSGP02765 367 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 ESR1P03372 595 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 SAT1P21673 171 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 RPS3P23396 243 aaKnown RBP eCLIP11.88□□□□□ -0.51
PTPRF-208ENST00000437607 TEAD1P28347 426 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 CSF2RBP32927 897 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 NSG1P42857 185 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 GNPDA1P46926 289 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 CDK3Q00526 305 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 CTBSQ01459 385 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 POU4F1Q01851 419 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 SRSF1Q07955 248 aaKnown RBP eCLIP11.88□□□□□ -0.51
PTPRF-208ENST00000437607 USP10Q14694 798 aaKnown RBP11.88□□□□□ -0.51
PTPRF-208ENST00000437607 TTMPQ5BVD1 217 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 ZNF789Q5FWF6 425 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 COLEC12Q5KU26 742 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 RBM20Q5T481 1227 aaKnown RBP11.88□□□□□ -0.51
PTPRF-208ENST00000437607 NKAIN2Q5VXU1 208 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 PTRHD1Q6GMV3 140 aaKnown RBP11.88□□□□□ -0.51
PTPRF-208ENST00000437607 SLC30A9Q6PML9 568 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 ADAMTSL4Q6UY14 1074 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 NLRP8Q86W28 1048 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 ZSCAN1Q8NBB4 408 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 ARL8AQ96BM9 186 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 TAAR9Q96RI9 348 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 SMC6Q96SB8 1091 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 NDNQ99608 321 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 AARSD1Q9BTE6 412 aaKnown RBP11.88□□□□□ -0.51
PTPRF-208ENST00000437607 TSSK1BQ9BXA7 367 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 GSDMCQ9BYG8 508 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 SLC25A18Q9H1K4 315 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 SNX15Q9NRS6 342 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 PCMTD2Q9NV79 361 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 GEMIN8Q9NWZ8 242 aaKnown RBP11.88□□□□□ -0.51
PTPRF-208ENST00000437607 TRNAU1APQ9NX07 287 aaKnown RBP11.88□□□□□ -0.51
PTPRF-208ENST00000437607 NOVA2Q9UNW9 492 aaKnown RBP11.88□□□□□ -0.51
PTPRF-208ENST00000437607 CRYL1Q9Y2S2 319 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 PCDHB11Q9Y5F2 797 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 PCDHGA3Q9Y5H0 932 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 COMMD10Q9Y6G5 202 aa11.88□□□□□ -0.51
PTPRF-208ENST00000437607 TNRC6AQ8NDV7 1962 aaKnown RBP11.88□□□□□ -0.51
PTPRF-208ENST00000437607 USP9YO00507 2555 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-208ENST00000437607 IGHV1OR21-1A0A087WYE8 117 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 AGAP14A8MT82 685 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 OR1I1O60431 355 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 VPS26AO75436 327 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 THRAP10827 490 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 SFTPCP11686 197 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 PKMP14618 531 aaKnown RBP11.87□□□□□ -0.51
PTPRF-208ENST00000437607 LIFP15018 202 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 STMN1P16949 149 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 MPSTP25325 297 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 GABRB3P28472 473 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 FMO4P31512 558 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 GPR3P46089 330 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 ADARP55265 1226 aaKnown RBP11.87□□□□□ -0.51
PTPRF-208ENST00000437607 MAGOHP61326 146 aaKnown RBP11.87□□□□□ -0.51
PTPRF-208ENST00000437607 ILF3Q12906 894 aaKnown RBP eCLIP11.87□□□□□ -0.51
PTPRF-208ENST00000437607 SQSTM1Q13501 440 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 CLPPQ16740 277 aaPredicted RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms