RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 MAGP20916 626 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 IDUAP35475 653 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 PTGER3P43115 390 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 GNPDA1P46926 289 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 TRAF3Q13114 568 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 SKIV2LQ15477 1246 aaKnown RBP11.88□□□□□ -0.51
CLIP3-201ENST00000360535 SF1Q15637 639 aaKnown RBP11.88□□□□□ -0.51
CLIP3-201ENST00000360535 DPY19L1Q2PZI1 675 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 ADAMTSL2Q86TH1 951 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 RBM12BQ8IXT5 1001 aaKnown RBP11.88□□□□□ -0.51
CLIP3-201ENST00000360535 ADGRG2Q8IZP9 1017 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 ARL10Q8N8L6 244 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 TERB1Q8NA31 727 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 ZNF548Q8NEK5 533 aaPredicted RBP11.88□□□□□ -0.51
CLIP3-201ENST00000360535 MCOLN3Q8TDD5 553 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 PPP3R2Q96LZ3 170 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 FAM126AQ9BYI3 521 aaPredicted RBP11.88□□□□□ -0.51
CLIP3-201ENST00000360535 EPS8L2Q9H6S3 715 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 PAK1IP1Q9NWT1 392 aaPredicted RBP11.88□□□□□ -0.51
CLIP3-201ENST00000360535 PATJQ8NI35 1801 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 SLC1A7O00341 560 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 BCKDKO14874 412 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 ANGPTL1O95841 491 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 ESR1P03372 595 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 DCTP40126 519 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 BCAP31P51572 246 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 TMBIM6P55061 237 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 CDH4P55283 916 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 GRIK2Q13002 908 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 DPP10Q8N608 796 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 LEMD2Q8NC56 503 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 NDNFQ8TB73 568 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 DOK1Q99704 481 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 OSBPL10Q9BXB5 764 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 AMBNQ9NP70 447 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 HEBP1Q9NRV9 189 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 BLOC1S6Q9UL45 172 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 PAIP2BQ9ULR5 123 aaKnown RBP11.88□□□□□ -0.51
CLIP3-201ENST00000360535 DHRS7Q9Y394 339 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 COCHO43405 550 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 TBL1XO60907 577 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 NDUFS2O75306 463 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 NADKO95544 446 aaPredicted RBP11.88□□□□□ -0.51
CLIP3-201ENST00000360535 CPSF4O95639 269 aaKnown RBP11.88□□□□□ -0.51
CLIP3-201ENST00000360535 ALDH2P05091 517 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 ATF6P18850 670 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 AQP1P29972 269 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 EIF2B2P49770 351 aaKnown RBP11.88□□□□□ -0.51
CLIP3-201ENST00000360535 RGS4P49798 205 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 ARF5P84085 180 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 MSRB3Q8IXL7 192 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 OR7A2PQ8NGA2 310 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 SELENOMQ8WWX9 145 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 RBM4BQ9BQ04 359 aaKnown RBP11.88□□□□□ -0.51
CLIP3-201ENST00000360535 RBM4Q9BWF3 364 aaKnown RBP11.88□□□□□ -0.51
CLIP3-201ENST00000360535 TNKS2Q9H2K2 1166 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 ZNF639Q9UID6 485 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 C3orf18Q9UK00 162 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 FBXO10Q9UK96 956 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 DLGAP4Q9Y2H0 992 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 TNPO3Q9Y5L0 923 aaKnown RBP11.88□□□□□ -0.51
CLIP3-201ENST00000360535 TRPM7Q96QT4 1865 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 C2orf78A6NCI8 922 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 TRIM64A6NGJ6 449 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 PER2O15055 1255 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 ANKRD28O15084 1053 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 KLK8O60259 260 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 PRSS23O95084 383 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 CPNE6O95741 557 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 ZNF7P17097 686 aaPredicted RBP11.87□□□□□ -0.51
CLIP3-201ENST00000360535 TACR1P25103 407 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 S100A3P33764 101 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 CDKN2CP42773 168 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 HSPA14Q0VDF9 509 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 DOK6Q6PKX4 331 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 ADCK1Q86TW2 530 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 ADHFE1Q8IWW8 467 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 MICU2Q8IYU8 434 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 ZFP90Q8TF47 636 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 LINC01599Q8WXQ3 324 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 TAMM41Q96BW9 452 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 C8orf4Q9NR00 106 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 VNN3Q9NY84 501 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 MSH3P20585 1137 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 OR1D2P34982 312 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 CRHR2Q13324 411 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 PLD1Q13393 1074 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 RBM48Q5RL73 367 aaKnown RBP11.87□□□□□ -0.51
CLIP3-201ENST00000360535 ZCCHC8Q6NZY4 707 aaKnown RBP11.87□□□□□ -0.51
CLIP3-201ENST00000360535 ZDHHC21Q8IVQ6 265 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 TTC30BQ8N4P2 665 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 ZBTB8BQ8NAP8 495 aaPredicted RBP11.87□□□□□ -0.51
CLIP3-201ENST00000360535 RORBQ92753 470 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 TPD52L3Q96J77 140 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 YTHDF1Q9BYJ9 559 aaKnown RBP11.87□□□□□ -0.51
CLIP3-201ENST00000360535 RNF38Q9H0F5 515 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 RRAGCQ9HB90 399 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 NMRK2Q9NPI5 230 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 SACM1LQ9NTJ5 587 aa11.87□□□□□ -0.51
CLIP3-201ENST00000360535 ARL15Q9NXU5 204 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms