RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 OTOP3Q7RTS5 596 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 FAM83AQ86UY5 434 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 FAM98AQ8NCA5 519 aaKnown RBP8.77□□□□□ -1.01
VCL-206ENST00000623461 PCDH19Q8TAB3 1148 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 AZIN2Q96A70 460 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 FAM83DQ9H4H8 585 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 MIOSQ9NXC5 875 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 PCDHGB1Q9Y5G3 927 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 MYH11P35749 1972 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 C9JVG2 144 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 MRPS14O60783 128 aaKnown RBP8.76□□□□□ -1.01
VCL-206ENST00000623461 NME6O75414 186 aaPredicted RBP8.76□□□□□ -1.01
VCL-206ENST00000623461 GMPSP49915 693 aaPredicted RBP8.76□□□□□ -1.01
VCL-206ENST00000623461 PIGGQ5H8A4 983 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 SNAP47Q5SQN1 464 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 UBE2R2Q712K3 238 aaPredicted RBP8.76□□□□□ -1.01
VCL-206ENST00000623461 LINC00471Q8N535 108 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 ZNF395Q9H8N7 513 aaPredicted RBP8.76□□□□□ -1.01
VCL-206ENST00000623461 CHMP1AQ9HD42 196 aaPredicted RBP8.76□□□□□ -1.01
VCL-206ENST00000623461 MEMO1Q9Y316 297 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 CEPT1Q9Y6K0 416 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 H3BRB1 525 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 IRF6O14896 467 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 KCNQ2O43526 872 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 CDRT1O95170 752 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 ANXA3P12429 323 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 ALDH7A1P49419 539 aaKnown RBP8.76□□□□□ -1.01
VCL-206ENST00000623461 ARF5P84085 180 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 ZDHHC20Q5W0Z9 365 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 ESRP1Q6NXG1 681 aaKnown RBP8.76□□□□□ -1.01
VCL-206ENST00000623461 SMIM5Q71RC9 77 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 ZC3H3Q8IXZ2 948 aaKnown RBP8.76□□□□□ -1.01
VCL-206ENST00000623461 FIBCD1Q8N539 461 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 LGALS12Q96DT0 336 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 OSMRQ99650 979 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 TUT1Q9H6E5 874 aaKnown RBP8.76□□□□□ -1.01
VCL-206ENST00000623461 MARCH2Q9P0N8 246 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 KANSL3Q9P2N6 904 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 FZD10Q9ULW2 581 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 CASTOR2A6NHX0 329 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 MATN3O15232 486 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 HOXA2O43364 376 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 VARSP26640 1264 aaKnown RBP8.76□□□□□ -1.01
VCL-206ENST00000623461 NPY5RQ15761 445 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 DPYSL2Q16555 572 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 VANGL1Q8TAA9 524 aaPredicted RBP8.76□□□□□ -1.01
VCL-206ENST00000623461 MCCC1Q96RQ3 725 aaPredicted RBP8.76□□□□□ -1.01
VCL-206ENST00000623461 C3orf14Q9HBI5 128 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 TMPRSS4Q9NRS4 437 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 HPF1Q9NWY4 346 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 HCN2Q9UL51 889 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 TIMM13Q9Y5L4 95 aaPredicted RBP8.76□□□□□ -1.01
VCL-206ENST00000623461 TLR4O00206 839 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 PAPSS2O95340 614 aaPredicted RBP8.76□□□□□ -1.01
VCL-206ENST00000623461 FADDQ13158 208 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 ZNHIT3Q15649 155 aaPredicted RBP8.76□□□□□ -1.01
VCL-206ENST00000623461 LY6KQ17RY6 165 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 NRG4Q8WWG1 115 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 EXOC2Q96KP1 924 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 KCNC2Q96PR1 638 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 GPR21Q99679 349 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 MTFR1LQ9H019 292 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 FOLH1BQ9HBA9 442 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 SGK2Q9HBY8 427 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 SMURF1Q9HCE7 757 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 TCAF2A6NFQ2 919 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 RIIAD1A6NNX1 92 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 SCAMP3O14828 347 aaKnown RBP8.76□□□□□ -1.01
VCL-206ENST00000623461 RECQL4O94761 1208 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 S100GP29377 79 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 MBTD1Q05BQ5 628 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 HEPACAMQ14CZ8 416 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 ZNF311Q5JNZ3 666 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 RNF180Q86T96 592 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 PHACTR4Q8IZ21 702 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 IKZF4Q9H2S9 585 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 GLS2Q9UI32 602 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 MAGED1Q9Y5V3 778 aaPredicted RBP8.76□□□□□ -1.01
VCL-206ENST00000623461 A8MT66 165 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 H3BMQ9 156 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 MAP2K3P46734 347 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 ZNF81P51508 661 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 CLCN4P51793 760 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 TAF13Q15543 124 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 PARP15Q460N3 678 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 C12orf29Q8N999 325 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 OR10T2Q8NGX3 314 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 STOML3Q8TAV4 291 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 RHBDF1Q96CC6 855 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 TMEM80Q96HE8 168 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 COG8Q96MW5 612 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 ZFP3Q96NJ6 502 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 ZFYVE1Q9HBF4 777 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 DDX4Q9NQI0 724 aaKnown RBP8.76□□□□□ -1.01
VCL-206ENST00000623461 EDARQ9UNE0 448 aa8.76□□□□□ -1.01
VCL-206ENST00000623461 LRG1P02750 347 aa8.75□□□□□ -1.01
VCL-206ENST00000623461 HLA-DPB1P04440 258 aa8.75□□□□□ -1.01
VCL-206ENST00000623461 BMP2P12643 396 aa8.75□□□□□ -1.01
VCL-206ENST00000623461 RORAP35398 523 aa8.75□□□□□ -1.01
VCL-206ENST00000623461 GRM5P41594 1212 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms