RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 PGDP52209 483 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 CSE1LP55060 971 aaKnown RBP17■□□□□ 0.31
COL7A1-206ENST00000466591 ITGA1P56199 1179 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 GPS2Q13227 327 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 ITIH4Q14624 930 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 KCTD11Q693B1 232 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 TCTN3Q6NUS6 607 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 AFTPHQ6ULP2 937 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 EFCAB3Q8N7B9 438 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 PPHLN1Q8NEY8 458 aaKnown RBP17■□□□□ 0.31
COL7A1-206ENST00000466591 SLC35B2Q8TB61 432 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 RUFY1Q96T51 708 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 SLC25A23Q9BV35 468 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 FRMD8P1Q9BZ68 369 aaPredicted RBP17■□□□□ 0.31
COL7A1-206ENST00000466591 TFB2MQ9H5Q4 396 aaKnown RBP17■□□□□ 0.31
COL7A1-206ENST00000466591 POLG2Q9UHN1 485 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 GPN3Q9UHW5 284 aaPredicted RBP17■□□□□ 0.31
COL7A1-206ENST00000466591 GUCA1BQ9UMX6 200 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 PADI2Q9Y2J8 665 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 SPTA1P02549 2419 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 TRBV5-4A0A0C4DH59 114 aa16.99■□□□□ 0.31
COL7A1-206ENST00000466591 BTN3A3O00478 584 aa16.99■□□□□ 0.31
COL7A1-206ENST00000466591 ST6GAL1P15907 406 aa16.99■□□□□ 0.31
COL7A1-206ENST00000466591 CCL11P51671 97 aa16.99■□□□□ 0.31
COL7A1-206ENST00000466591 PLOD1Q02809 727 aaPredicted RBP16.99■□□□□ 0.31
COL7A1-206ENST00000466591 KLF1Q13351 362 aaPredicted RBP16.99■□□□□ 0.31
COL7A1-206ENST00000466591 MSLNQ13421 630 aaPredicted RBP16.99■□□□□ 0.31
COL7A1-206ENST00000466591 SEMA5AQ13591 1074 aa16.99■□□□□ 0.31
COL7A1-206ENST00000466591 SNX1Q13596 522 aa16.99■□□□□ 0.31
COL7A1-206ENST00000466591 IGFBP7Q16270 282 aa16.99■□□□□ 0.31
COL7A1-206ENST00000466591 FASTKD1Q53R41 847 aaKnown RBP16.99■□□□□ 0.31
COL7A1-206ENST00000466591 RNF10Q8N5U6 811 aaKnown RBP16.99■□□□□ 0.31
COL7A1-206ENST00000466591 OTUD6BQ8N6M0 293 aa16.99■□□□□ 0.31
COL7A1-206ENST00000466591 ENDOVQ8N8Q3 282 aaKnown RBP16.99■□□□□ 0.31
COL7A1-206ENST00000466591 RAB6BQ9NRW1 208 aa16.99■□□□□ 0.31
COL7A1-206ENST00000466591 CAPN6Q9Y6Q1 641 aa16.99■□□□□ 0.31
COL7A1-206ENST00000466591 TCRBV7S2A1N4TA0A589 114 aa16.98■□□□□ 0.31
COL7A1-206ENST00000466591 CCDC162PA2VCL2 907 aa16.98■□□□□ 0.31
COL7A1-206ENST00000466591 OR51F1A6NGY5 319 aa16.98■□□□□ 0.31
COL7A1-206ENST00000466591 ISM1B1AKI9 464 aa16.98■□□□□ 0.31
COL7A1-206ENST00000466591 DNAJB5O75953 348 aa16.98■□□□□ 0.31
COL7A1-206ENST00000466591 RPN2P04844 631 aa16.98■□□□□ 0.31
COL7A1-206ENST00000466591 PVRP15151 417 aa16.98■□□□□ 0.31
COL7A1-206ENST00000466591 CHAF1BQ13112 559 aa16.98■□□□□ 0.31
COL7A1-206ENST00000466591 AARS2Q5JTZ9 985 aaKnown RBP16.98■□□□□ 0.31
COL7A1-206ENST00000466591 SPESP1Q6UW49 350 aa16.98■□□□□ 0.31
COL7A1-206ENST00000466591 GSTA5Q7RTV2 222 aa16.98■□□□□ 0.31
COL7A1-206ENST00000466591 APLFQ8IW19 511 aaPredicted RBP16.98■□□□□ 0.31
COL7A1-206ENST00000466591 PIANPQ8IYJ0 282 aa16.98■□□□□ 0.31
COL7A1-206ENST00000466591 SYTL1Q8IYJ3 562 aa16.98■□□□□ 0.31
COL7A1-206ENST00000466591 DSELQ8IZU8 1212 aa16.98■□□□□ 0.31
COL7A1-206ENST00000466591 OR5AR1Q8NGP9 310 aa16.98■□□□□ 0.31
COL7A1-206ENST00000466591 OR1L3Q8NH93 324 aa16.98■□□□□ 0.31
COL7A1-206ENST00000466591 HES6Q96HZ4 224 aa16.98■□□□□ 0.31
COL7A1-206ENST00000466591 C17orf62Q9BQA9 187 aa16.98■□□□□ 0.31
COL7A1-206ENST00000466591 AKIRIN1Q9H9L7 192 aaPredicted RBP16.98■□□□□ 0.31
COL7A1-206ENST00000466591 ETNK1Q9HBU6 452 aa16.98■□□□□ 0.31
COL7A1-206ENST00000466591 TTLL8A6PVC2 850 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 LIASO43766 372 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 OR2B3O76000 313 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 APRTP07741 180 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 ABRQ12979 859 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 TMED2Q15363 201 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 RPS6KA1Q15418 735 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 PRAMEF17Q5VTA0 474 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 IZUMO3Q5VZ72 239 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 PACS1Q6VY07 963 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 NLRP9Q7RTR0 991 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 RAB43Q86YS6 212 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 TBC1D21Q8IYX1 336 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 C19orf47Q8N9M1 422 aaKnown RBP16.97■□□□□ 0.31
COL7A1-206ENST00000466591 CFAP61Q8NHU2 1237 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 SKA2Q8WVK7 121 aaPredicted RBP16.97■□□□□ 0.31
COL7A1-206ENST00000466591 C1orf54Q8WWF1 131 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 HDAC10Q969S8 669 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 TCTN2Q96GX1 697 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 LRFN5Q96NI6 719 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 TRAPPC9Q96Q05 1148 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 NLNQ9BYT8 704 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 ING2Q9H160 280 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 TXLNGQ9NUQ3 528 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 PAK5Q9P286 719 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 MAP10Q9P2G4 905 aa16.97■□□□□ 0.31
COL7A1-206ENST00000466591 MROH6A6NGR9 719 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 ZNF749O43361 778 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 GOT2P00505 430 aaKnown RBP16.96■□□□□ 0.31
COL7A1-206ENST00000466591 RAB40ALP0C0E4 278 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 ADRA1DP25100 572 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 CDC25BP30305 580 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 RRADP55042 308 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 FOXK1P85037 733 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 HSPA14Q0VDF9 509 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 IL10RAQ13651 578 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 PTCHD3Q3KNS1 767 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 TSTD2Q5T7W7 516 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 MLIPQ5VWP3 458 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 CPZQ66K79 652 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 TTC23LQ6PF05 361 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 NAPRTQ6XQN6 538 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 UNC5AQ6ZN44 842 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms