RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 FERD3LQ96RJ6 166 aa14.45□□□□□ -0.1
CLN3-213ENST00000565047 MVB12BQ9H7P6 319 aa14.45□□□□□ -0.1
CLN3-213ENST00000565047 VPS37BQ9H9H4 285 aa14.45□□□□□ -0.1
CLN3-213ENST00000565047 EIF2B3Q9NR50 452 aaKnown RBP14.45□□□□□ -0.1
CLN3-213ENST00000565047 FGF21Q9NSA1 209 aa14.45□□□□□ -0.1
CLN3-213ENST00000565047 TREX1Q9NSU2 369 aa14.45□□□□□ -0.1
CLN3-213ENST00000565047 CROTQ9UKG9 612 aa14.45□□□□□ -0.1
CLN3-213ENST00000565047 CDYLQ9Y232 598 aa14.45□□□□□ -0.1
CLN3-213ENST00000565047 TCAF1Q9Y4C2 921 aa14.45□□□□□ -0.1
CLN3-213ENST00000565047 PCDHGA6Q9Y5G7 932 aa14.45□□□□□ -0.1
CLN3-213ENST00000565047 TLN1Q9Y490 2541 aaKnown RBP14.44□□□□□ -0.1
CLN3-213ENST00000565047 TENM4Q6N022 2769 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 BTN3A1O00481 513 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 LIN7AO14910 233 aaPredicted RBP14.44□□□□□ -0.1
CLN3-213ENST00000565047 ZBTB11O95625 1053 aaPredicted RBP14.44□□□□□ -0.1
CLN3-213ENST00000565047 RECKO95980 971 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 FGGP02679 453 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 APRTP07741 180 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 FURINP09958 794 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 MSL3P1P0C860 447 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 PRDX3P30048 256 aaKnown RBP14.44□□□□□ -0.1
CLN3-213ENST00000565047 KCNJ1P48048 391 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 ARCN1P48444 511 aaKnown RBP14.44□□□□□ -0.1
CLN3-213ENST00000565047 TUBB4BP68371 445 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 ACY1Q03154 408 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 TUBB2AQ13885 445 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 KCTD19Q17RG1 926 aaPredicted RBP14.44□□□□□ -0.1
CLN3-213ENST00000565047 ATP1A1-AS1Q5TC04 95 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 RASGRP3Q8IV61 690 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 PRELID2Q8N945 189 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 OR4L1Q8NH43 312 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 FLVCR1-AS1Q8TAF5 88 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 LCN9Q8WX39 176 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 KIAA1143Q96AT1 154 aaPredicted RBP14.44□□□□□ -0.1
CLN3-213ENST00000565047 TUBB2BQ9BVA1 445 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 ADNPQ9H2P0 1102 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 PDE7BQ9NP56 450 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 LHX9Q9NQ69 397 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 CHRAC1Q9NRG0 131 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 LATS2Q9NRM7 1088 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 C1GALT1Q9NS00 363 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 RARRES3Q9UL19 164 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 PADI1Q9ULC6 663 aa14.44□□□□□ -0.1
CLN3-213ENST00000565047 PIKFYVEQ9Y2I7 2098 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 UBA6A0AVT1 1052 aaPredicted RBP14.43□□□□□ -0.1
CLN3-213ENST00000565047 SLC9B1P1A6NJY1 282 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 QSOX1O00391 747 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 SFTPCP11686 197 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 ARNTP27540 789 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 DLSTP36957 453 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 POLE2P56282 527 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 GPR19Q15760 415 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 LYPLAL1Q5VWZ2 237 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 CYB5D1Q6P9G0 228 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 AFTPHQ6ULP2 937 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 NAPRTQ6XQN6 538 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 PPP1R21Q6ZMI0 780 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 NLRP9Q7RTR0 991 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 AMIGO1Q86WK6 493 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 TRIM58Q8NG06 486 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 OR5AR1Q8NGP9 310 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 ALS2CR12Q96Q35 445 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 ARHGAP9Q9BRR9 750 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 SLC25A18Q9H1K4 315 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 SRMSQ9H3Y6 488 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 MARCH4Q9P2E8 410 aaPredicted RBP14.43□□□□□ -0.1
CLN3-213ENST00000565047 TUBD1Q9UJT1 453 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 ICKQ9UPZ9 632 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 PPP2R2CQ9Y2T4 447 aa14.43□□□□□ -0.1
CLN3-213ENST00000565047 TCRBV7S3A2A0A539 114 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 H3BMH7 237 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 MATN2O00339 956 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 IFRD1O00458 451 aaPredicted RBP14.42□□□□□ -0.1
CLN3-213ENST00000565047 SUV39H1O43463 412 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 GPC4O75487 556 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 FTH1P02794 183 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 NTRK1P04629 796 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 PRKAR1AP10644 381 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 ST6GAL1P15907 406 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 CCR7P32248 378 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 CXCR5P32302 372 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 NFATC3Q12968 1075 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 ABRQ12979 859 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 PRKG2Q13237 762 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 KRT33BQ14525 404 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 PCID2Q5JVF3 399 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 PRAMEF17Q5VTA0 474 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 C4orf22Q6V702 233 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 VRK3Q8IV63 474 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 CCDC89Q8N998 374 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 OR8K5Q8NH50 307 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 LKAAEAR1Q8TD35 194 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 CT55Q8WUE5 264 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 ELMO1Q92556 727 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 STAMBPL1Q96FJ0 436 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 LRFN5Q96NI6 719 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 TRAPPC9Q96Q05 1148 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 RUFY1Q96T51 708 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 MENTQ9BUN1 341 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 XKR8Q9H6D3 395 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms