RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 IQCF5A8MTL0 148 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 BHMG1C9JSJ3 638 aaPredicted RBP17.22■□□□□ 0.35
HDDC3-205ENST00000559898 SUV39H1O43463 412 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 SUN1O94901 812 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 CTSBP07858 339 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 CCR10P46092 362 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 KCNJ1P48048 391 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 LMAN1P49257 510 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 CSE1LP55060 971 aaKnown RBP17.22■□□□□ 0.35
HDDC3-205ENST00000559898 HSD11B2P80365 405 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 CDH17Q12864 832 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 DNASE1L3Q13609 305 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 LAMB3Q13751 1172 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 BOP1Q14137 746 aaKnown RBP17.22■□□□□ 0.35
HDDC3-205ENST00000559898 KRT33BQ14525 404 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 SKIDA1Q1XH10 827 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 TSTD2Q5T7W7 516 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 VRK3Q8IV63 474 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 SPNS2Q8IVW8 549 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 ADGRF3Q8IZF5 1079 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 DNAAF3Q8N9W5 541 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 ACVR1CQ8NER5 493 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 LCN9Q8WX39 176 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 PDE7BQ9NP56 450 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 RAB6BQ9NRW1 208 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 MARCH4Q9P2E8 410 aaPredicted RBP17.22■□□□□ 0.35
HDDC3-205ENST00000559898 CIDEBQ9UHD4 219 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 CDC14CA4D256 554 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 PSMD3O43242 534 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 CDH3P22223 829 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 ACADLP28330 430 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 PRDX3P30048 256 aaKnown RBP17.21■□□□□ 0.35
HDDC3-205ENST00000559898 TERF1P54274 439 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 CCZ1BP86790 482 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 CCZ1P86791 482 aaPredicted RBP17.21■□□□□ 0.35
HDDC3-205ENST00000559898 SEMA5AQ13591 1074 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 RPS6KA1Q15418 735 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 ZNF789Q5FWF6 425 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 ARMC6Q6NXE6 501 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 KLHL35Q6PF15 583 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 PPP1R21Q6ZMI0 780 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 FAM20CQ8IXL6 584 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 OR1L3Q8NH93 324 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 HEXDCQ8WVB3 486 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 ZFPM2Q8WW38 1151 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 TFGQ92734 400 aaPredicted RBP17.21■□□□□ 0.35
HDDC3-205ENST00000559898 CD180Q99467 661 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 SRMSQ9H3Y6 488 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 SOHLH2Q9NX45 425 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 SPHK1Q9NYA1 384 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 PADI1Q9ULC6 663 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 BTRCQ9Y297 605 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 HEMK1Q9Y5R4 338 aaPredicted RBP17.21■□□□□ 0.35
HDDC3-205ENST00000559898 COLEC10Q9Y6Z7 277 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 CCDC88CQ9P219 2028 aa17.21■□□□□ 0.35
HDDC3-205ENST00000559898 TCRBV7S3A2A0A539 114 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 SLC5A10A0PJK1 596 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 KRT86O43790 486 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 DNAJB5O75953 348 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 ZBTB11O95625 1053 aaPredicted RBP17.2■□□□□ 0.34
HDDC3-205ENST00000559898 STIP1P31948 543 aaKnown RBP17.2■□□□□ 0.34
HDDC3-205ENST00000559898 CXCR5P32302 372 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 FDFT1P37268 417 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 ARL4DP49703 201 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 TUBB4BP68371 445 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 IL10RAQ13651 578 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 TUBB2AQ13885 445 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 ZIC1Q15915 447 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 LINC00523Q86TU6 105 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 TMEM151BQ8IW70 566 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 TXLNBQ8N3L3 684 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 FLVCR1-AS1Q8TAF5 88 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 ELMO1Q92556 727 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 ABHD17AQ96GS6 310 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 TRAPPC9Q96Q05 1148 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 TUBB2BQ9BVA1 445 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 TSGA10Q9BZW7 698 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 ACTL8Q9H568 366 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 FAM60AQ9NP50 221 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 CHRAC1Q9NRG0 131 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 TCAF1Q9Y4C2 921 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 KCNMB2Q9Y691 235 aa17.2■□□□□ 0.34
HDDC3-205ENST00000559898 KLHL33A6NCF5 533 aa17.19■□□□□ 0.34
HDDC3-205ENST00000559898 ARHGAP6O43182 974 aa17.19■□□□□ 0.34
HDDC3-205ENST00000559898 CREG1O75629 220 aa17.19■□□□□ 0.34
HDDC3-205ENST00000559898 SCRG1O75711 98 aa17.19■□□□□ 0.34
HDDC3-205ENST00000559898 AP2A2O94973 939 aa17.19■□□□□ 0.34
HDDC3-205ENST00000559898 APRTP07741 180 aa17.19■□□□□ 0.34
HDDC3-205ENST00000559898 NDUFS1P28331 727 aa17.19■□□□□ 0.34
HDDC3-205ENST00000559898 PEBP1P30086 187 aaKnown RBP17.19■□□□□ 0.34
HDDC3-205ENST00000559898 CCR7P32248 378 aa17.19■□□□□ 0.34
HDDC3-205ENST00000559898 NSG1P42857 185 aa17.19■□□□□ 0.34
HDDC3-205ENST00000559898 SESN2P58004 480 aaPredicted RBP17.19■□□□□ 0.34
HDDC3-205ENST00000559898 ACY1Q03154 408 aa17.19■□□□□ 0.34
HDDC3-205ENST00000559898 ACVR1Q04771 509 aa17.19■□□□□ 0.34
HDDC3-205ENST00000559898 DEFB110Q30KQ9 67 aa17.19■□□□□ 0.34
HDDC3-205ENST00000559898 PACS1Q6VY07 963 aa17.19■□□□□ 0.34
HDDC3-205ENST00000559898 AMIGO1Q86WK6 493 aa17.19■□□□□ 0.34
HDDC3-205ENST00000559898 KMT5CQ86Y97 462 aa17.19■□□□□ 0.34
HDDC3-205ENST00000559898 TMEM126BQ8IUX1 230 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms