RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 ZFPM2Q8WW38 1151 aa10.36□□□□□ -0.75
CD44-227ENST00000528086 SLC39A7Q92504 469 aa10.36□□□□□ -0.75
CD44-227ENST00000528086 TFGQ92734 400 aaPredicted RBP10.36□□□□□ -0.75
CD44-227ENST00000528086 PEX13Q92968 403 aa10.36□□□□□ -0.75
CD44-227ENST00000528086 MAGOHBQ96A72 148 aaKnown RBP10.36□□□□□ -0.75
CD44-227ENST00000528086 PBKQ96KB5 322 aa10.36□□□□□ -0.75
CD44-227ENST00000528086 BIRC8Q96P09 236 aa10.36□□□□□ -0.75
CD44-227ENST00000528086 OR6C1Q96RD1 312 aa10.36□□□□□ -0.75
CD44-227ENST00000528086 RUFY1Q96T51 708 aa10.36□□□□□ -0.75
CD44-227ENST00000528086 PLAC1Q9HBJ0 212 aa10.36□□□□□ -0.75
CD44-227ENST00000528086 HRASLS2Q9NWW9 162 aa10.36□□□□□ -0.75
CD44-227ENST00000528086 SPHK1Q9NYA1 384 aa10.36□□□□□ -0.75
CD44-227ENST00000528086 IL1RAPL1Q9NZN1 696 aa10.36□□□□□ -0.75
CD44-227ENST00000528086 GALPQ9UBC7 116 aa10.36□□□□□ -0.75
CD44-227ENST00000528086 POMT2Q9UKY4 750 aa10.36□□□□□ -0.75
CD44-227ENST00000528086 SNX12Q9UMY4 172 aa10.36□□□□□ -0.75
CD44-227ENST00000528086 MED16Q9Y2X0 877 aa10.36□□□□□ -0.75
CD44-227ENST00000528086 HELZ2Q9BYK8 2649 aaKnown RBP10.36□□□□□ -0.75
CD44-227ENST00000528086 SPENQ96T58 3664 aaKnown RBP10.35□□□□□ -0.75
CD44-227ENST00000528086 GCN1Q92616 2671 aaKnown RBP10.35□□□□□ -0.75
CD44-227ENST00000528086 KRT87PA6NCN2 255 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 CFAP99D6REC4 459 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 H3BMH7 237 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 POLR1CO15160 346 aaPredicted RBP10.35□□□□□ -0.75
CD44-227ENST00000528086 TP73O15350 636 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 CD3EAPO15446 510 aaKnown RBP10.35□□□□□ -0.75
CD44-227ENST00000528086 NKX2-8O15522 239 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 SPAG6O75602 509 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 CTSBP07858 339 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 PVRP15151 417 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 PTGIRP43119 386 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 CD151P48509 253 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 NPY2RP49146 381 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 LMAN1P49257 510 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 RAB15P59190 212 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 GPS1Q13098 491 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 RPA4Q13156 261 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 COL9A2Q14055 689 aaPredicted RBP10.35□□□□□ -0.75
CD44-227ENST00000528086 ZIC1Q15915 447 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 MANEAQ5SRI9 462 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 TMEM164Q5U3C3 297 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 PWWP2BQ6NUJ5 590 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 CENPUQ71F23 418 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 CACNA2D3Q8IZS8 1091 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 ZNF843Q8N446 348 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 NAT8LQ8N9F0 302 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 ACVR1CQ8NER5 493 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 OR6P1Q8NGX9 317 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 ACTRT1Q8TDG2 376 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 MAIP1Q8WWC4 291 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 ZDHHC12Q96GR4 267 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 ELMO2Q96JJ3 720 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 SIGLEC10Q96LC7 697 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 FERD3LQ96RJ6 166 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 HGH1Q9BTY7 390 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 PITPNM3Q9BZ71 974 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 ASPSCR1Q9BZE9 553 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 IL22Q9GZX6 179 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 TFB2MQ9H5Q4 396 aaKnown RBP10.35□□□□□ -0.75
CD44-227ENST00000528086 MRM3Q9HC36 420 aaKnown RBP10.35□□□□□ -0.75
CD44-227ENST00000528086 AKAP7Q9P0M2 348 aaPredicted RBP10.35□□□□□ -0.75
CD44-227ENST00000528086 SOX13Q9UN79 622 aa10.35□□□□□ -0.75
CD44-227ENST00000528086 MRPS18BQ9Y676 258 aaKnown RBP10.35□□□□□ -0.75
CD44-227ENST00000528086 ZCWPW2A0A1B0GU75 182 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 TLCD2A6NGC4 264 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 SLC9B1P1A6NJY1 282 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 ERVH48-1M5A8F1 160 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 LIN7AO14910 233 aaPredicted RBP10.34□□□□□ -0.75
CD44-227ENST00000528086 RASSF9O75901 435 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 SLCO2B1O94956 709 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 VAPBO95292 243 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 FURINP09958 794 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 ST6GAL1P15907 406 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 AOAHP28039 575 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 PRDX3P30048 256 aaKnown RBP10.34□□□□□ -0.75
CD44-227ENST00000528086 GABRA4P48169 554 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 PPM1FP49593 454 aaPredicted RBP10.34□□□□□ -0.75
CD44-227ENST00000528086 CSE1LP55060 971 aaKnown RBP10.34□□□□□ -0.75
CD44-227ENST00000528086 CDK16Q00536 496 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 RHDQ02161 417 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 FOXM1Q08050 763 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 ABRQ12979 859 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 GBX1Q14549 363 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 PLCL1Q15111 1095 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 GPR19Q15760 415 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 TYSND1Q2T9J0 566 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 ATP1A1-AS1Q5TC04 95 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 LCN10Q6JVE6 187 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 CCDC137Q6PK04 289 aaKnown RBP10.34□□□□□ -0.75
CD44-227ENST00000528086 CEACAM20Q6UY09 585 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 C4orf22Q6V702 233 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 UNC5AQ6ZN44 842 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 NLRP9Q7RTR0 991 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 GSTA5Q7RTV2 222 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 TRIM73Q86UV7 250 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 CREG2Q8IUH2 290 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 TMEM151BQ8IW70 566 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 FAM20CQ8IXL6 584 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 SLC22A15Q8IZD6 547 aa10.34□□□□□ -0.75
CD44-227ENST00000528086 NLGN4XQ8N0W4 816 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms