RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 ACVR1CQ8NER5 493 aa20.96■□□□□ 0.95
USP40-215ENST00000484528 HEXDCQ8WVB3 486 aa20.96■□□□□ 0.95
USP40-215ENST00000484528 MR1Q95460 341 aa20.96■□□□□ 0.95
USP40-215ENST00000484528 HGH1Q9BTY7 390 aa20.96■□□□□ 0.95
USP40-215ENST00000484528 KCND1Q9NSA2 647 aa20.96■□□□□ 0.95
USP40-215ENST00000484528 BTRCQ9Y297 605 aa20.96■□□□□ 0.95
USP40-215ENST00000484528 FER1L5A0AVI2 2057 aa20.95■□□□□ 0.94
USP40-215ENST00000484528 RP1L1Q8IWN7 2480 aaPredicted RBP20.95■□□□□ 0.94
USP40-215ENST00000484528 MIF4GDA9UHW6 222 aaKnown RBP20.95■□□□□ 0.94
USP40-215ENST00000484528 MKRN2OSH3BPM6 223 aa20.95■□□□□ 0.94
USP40-215ENST00000484528 IFRD1O00458 451 aaPredicted RBP20.95■□□□□ 0.94
USP40-215ENST00000484528 BTN3A3O00478 584 aa20.95■□□□□ 0.94
USP40-215ENST00000484528 ZNF189O75820 626 aaPredicted RBP20.95■□□□□ 0.94
USP40-215ENST00000484528 DNAJB5O75953 348 aa20.95■□□□□ 0.94
USP40-215ENST00000484528 KIF5AQ12840 1032 aa20.95■□□□□ 0.94
USP40-215ENST00000484528 IGFBP7Q16270 282 aa20.95■□□□□ 0.94
USP40-215ENST00000484528 DBN1Q16643 649 aa20.95■□□□□ 0.94
USP40-215ENST00000484528 ZNF658BQ4V348 819 aaPredicted RBP20.95■□□□□ 0.94
USP40-215ENST00000484528 BPHLQ86WA6 291 aaPredicted RBP20.95■□□□□ 0.94
USP40-215ENST00000484528 SLC38A9Q8NBW4 561 aa20.95■□□□□ 0.94
USP40-215ENST00000484528 OR52E1Q8NGJ3 308 aa20.95■□□□□ 0.94
USP40-215ENST00000484528 SLC35B2Q8TB61 432 aa20.95■□□□□ 0.94
USP40-215ENST00000484528 ATG4AQ8WYN0 398 aa20.95■□□□□ 0.94
USP40-215ENST00000484528 CDKN2AIPNLQ96HQ2 116 aa20.95■□□□□ 0.94
USP40-215ENST00000484528 KLHL25Q9H0H3 589 aa20.95■□□□□ 0.94
USP40-215ENST00000484528 XKR8Q9H6D3 395 aa20.95■□□□□ 0.94
USP40-215ENST00000484528 VPS37BQ9H9H4 285 aa20.95■□□□□ 0.94
USP40-215ENST00000484528 C17orf113A0A1B0GUU1 675 aa20.94■□□□□ 0.94
USP40-215ENST00000484528 OR51F1A6NGY5 319 aa20.94■□□□□ 0.94
USP40-215ENST00000484528 H7C0S8 307 aa20.94■□□□□ 0.94
USP40-215ENST00000484528 BTN3A1O00481 513 aa20.94■□□□□ 0.94
USP40-215ENST00000484528 RFPL1O75677 317 aa20.94■□□□□ 0.94
USP40-215ENST00000484528 PVRP15151 417 aa20.94■□□□□ 0.94
USP40-215ENST00000484528 PMS2P54278 862 aa20.94■□□□□ 0.94
USP40-215ENST00000484528 CACNG1Q06432 222 aa20.94■□□□□ 0.94
USP40-215ENST00000484528 ABRQ12979 859 aa20.94■□□□□ 0.94
USP40-215ENST00000484528 PRKG2Q13237 762 aa20.94■□□□□ 0.94
USP40-215ENST00000484528 P3H1Q32P28 736 aa20.94■□□□□ 0.94
USP40-215ENST00000484528 CCDC38Q502W7 563 aa20.94■□□□□ 0.94
USP40-215ENST00000484528 GAS2L3Q86XJ1 694 aa20.94■□□□□ 0.94
USP40-215ENST00000484528 SYCE1Q8N0S2 351 aa20.94■□□□□ 0.94
USP40-215ENST00000484528 C19orf43Q9BQ61 176 aa20.94■□□□□ 0.94
USP40-215ENST00000484528 TRIM55Q9BYV6 548 aa20.94■□□□□ 0.94
USP40-215ENST00000484528 SMARCAL1Q9NZC9 954 aa20.94■□□□□ 0.94
USP40-215ENST00000484528 TLK1Q9UKI8 766 aa20.94■□□□□ 0.94
USP40-215ENST00000484528 PRSS21Q9Y6M0 314 aa20.94■□□□□ 0.94
USP40-215ENST00000484528 CAPN6Q9Y6Q1 641 aa20.94■□□□□ 0.94
USP40-215ENST00000484528 CYSRT1A8MQ03 144 aa20.93■□□□□ 0.94
USP40-215ENST00000484528 AP2A1O95782 977 aa20.93■□□□□ 0.94
USP40-215ENST00000484528 ST6GAL1P15907 406 aa20.93■□□□□ 0.94
USP40-215ENST00000484528 PTPN4P29074 926 aa20.93■□□□□ 0.94
USP40-215ENST00000484528 LMAN1P49257 510 aa20.93■□□□□ 0.94
USP40-215ENST00000484528 CHAF1BQ13112 559 aa20.93■□□□□ 0.94
USP40-215ENST00000484528 IL10RAQ13651 578 aa20.93■□□□□ 0.94
USP40-215ENST00000484528 CPZQ66K79 652 aa20.93■□□□□ 0.94
USP40-215ENST00000484528 STYXQ8WUJ0 223 aa20.93■□□□□ 0.94
USP40-215ENST00000484528 CHST8Q9H2A9 424 aa20.93■□□□□ 0.94
USP40-215ENST00000484528 FANCEQ9HB96 536 aa20.93■□□□□ 0.94
USP40-215ENST00000484528 C1GALT1Q9NS00 363 aa20.93■□□□□ 0.94
USP40-215ENST00000484528 CCDC88CQ9P219 2028 aa20.93■□□□□ 0.94
USP40-215ENST00000484528 COL12A1Q99715 3063 aa20.93■□□□□ 0.94
USP40-215ENST00000484528 TMEM150CB9EJG8 249 aa20.92■□□□□ 0.94
USP40-215ENST00000484528 MATN2O00339 956 aa20.92■□□□□ 0.94
USP40-215ENST00000484528 MSNP26038 577 aaKnown RBP20.92■□□□□ 0.94
USP40-215ENST00000484528 PRDX3P30048 256 aaKnown RBP20.92■□□□□ 0.94
USP40-215ENST00000484528 RPS15P62841 145 aaKnown RBP20.92■□□□□ 0.94
USP40-215ENST00000484528 BOP1Q14137 746 aaKnown RBP20.92■□□□□ 0.94
USP40-215ENST00000484528 BRD3Q15059 726 aa20.92■□□□□ 0.94
USP40-215ENST00000484528 LCN10Q6JVE6 187 aa20.92■□□□□ 0.94
USP40-215ENST00000484528 ZNF449Q6P9G9 518 aa20.92■□□□□ 0.94
USP40-215ENST00000484528 NAPRTQ6XQN6 538 aa20.92■□□□□ 0.94
USP40-215ENST00000484528 CARFQ8N187 725 aa20.92■□□□□ 0.94
USP40-215ENST00000484528 SPC24Q8NBT2 197 aa20.92■□□□□ 0.94
USP40-215ENST00000484528 OR52K1Q8NGK4 314 aa20.92■□□□□ 0.94
USP40-215ENST00000484528 OR8K5Q8NH50 307 aa20.92■□□□□ 0.94
USP40-215ENST00000484528 OR1L3Q8NH93 324 aa20.92■□□□□ 0.94
USP40-215ENST00000484528 TFGQ92734 400 aaPredicted RBP20.92■□□□□ 0.94
USP40-215ENST00000484528 ALS2CR12Q96Q35 445 aa20.92■□□□□ 0.94
USP40-215ENST00000484528 GPR87Q9BY21 358 aa20.92■□□□□ 0.94
USP40-215ENST00000484528 MVB12BQ9H7P6 319 aa20.92■□□□□ 0.94
USP40-215ENST00000484528 PDGFAP04085 211 aa20.91■□□□□ 0.94
USP40-215ENST00000484528 FOXK1P85037 733 aa20.91■□□□□ 0.94
USP40-215ENST00000484528 KLRB1Q12918 225 aa20.91■□□□□ 0.94
USP40-215ENST00000484528 LAMB3Q13751 1172 aa20.91■□□□□ 0.94
USP40-215ENST00000484528 UGT8Q16880 541 aa20.91■□□□□ 0.94
USP40-215ENST00000484528 FAM69BQ5VUD6 431 aa20.91■□□□□ 0.94
USP40-215ENST00000484528 TCTN3Q6NUS6 607 aa20.91■□□□□ 0.94
USP40-215ENST00000484528 ASB18Q6ZVZ8 466 aa20.91■□□□□ 0.94
USP40-215ENST00000484528 CLIP3Q96DZ5 547 aa20.91■□□□□ 0.94
USP40-215ENST00000484528 HES6Q96HZ4 224 aa20.91■□□□□ 0.94
USP40-215ENST00000484528 TFB2MQ9H5Q4 396 aaKnown RBP20.91■□□□□ 0.94
USP40-215ENST00000484528 LATS2Q9NRM7 1088 aa20.91■□□□□ 0.94
USP40-215ENST00000484528 FARSAQ9Y285 508 aaKnown RBP20.91■□□□□ 0.94
USP40-215ENST00000484528 CCDC162PA2VCL2 907 aa20.9■□□□□ 0.94
USP40-215ENST00000484528 PSMD3O43242 534 aa20.9■□□□□ 0.94
USP40-215ENST00000484528 FOXN2P32314 431 aa20.9■□□□□ 0.94
USP40-215ENST00000484528 CD151P48509 253 aa20.9■□□□□ 0.94
USP40-215ENST00000484528 RPA4Q13156 261 aa20.9■□□□□ 0.94
USP40-215ENST00000484528 SEMA5AQ13591 1074 aa20.9■□□□□ 0.94
USP40-215ENST00000484528 PLEKHS1Q5SXH7 462 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms