RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 CRY1Q16526 586 aa14.56□□□□□ -0.08
USP4-203ENST00000415188 RSPO4Q2I0M5 234 aaPredicted RBP14.56□□□□□ -0.08
USP4-203ENST00000415188 BLOC1S3Q6QNY0 202 aa14.56□□□□□ -0.08
USP4-203ENST00000415188 TAS2R42Q7RTR8 314 aa14.56□□□□□ -0.08
USP4-203ENST00000415188 ARPINQ7Z6K5 226 aa14.56□□□□□ -0.08
USP4-203ENST00000415188 CPXM2Q8N436 756 aa14.56□□□□□ -0.08
USP4-203ENST00000415188 SIDT2Q8NBJ9 832 aaKnown RBP14.56□□□□□ -0.08
USP4-203ENST00000415188 OR9I1Q8NGQ6 314 aa14.56□□□□□ -0.08
USP4-203ENST00000415188 WBP2Q969T9 261 aa14.56□□□□□ -0.08
USP4-203ENST00000415188 ACDQ96AP0 544 aa14.56□□□□□ -0.08
USP4-203ENST00000415188 ALG14Q96F25 216 aa14.56□□□□□ -0.08
USP4-203ENST00000415188 TSC22D3Q99576 134 aa14.56□□□□□ -0.08
USP4-203ENST00000415188 HGH1Q9BTY7 390 aa14.56□□□□□ -0.08
USP4-203ENST00000415188 YIPF3Q9GZM5 350 aa14.56□□□□□ -0.08
USP4-203ENST00000415188 SEMA4BQ9NPR2 832 aaPredicted RBP14.56□□□□□ -0.08
USP4-203ENST00000415188 CD274Q9NZQ7 290 aa14.56□□□□□ -0.08
USP4-203ENST00000415188 ZIM2Q9NZV7 527 aa14.56□□□□□ -0.08
USP4-203ENST00000415188 GNPTGQ9UJJ9 305 aa14.56□□□□□ -0.08
USP4-203ENST00000415188 GPR45Q9Y5Y3 372 aa14.56□□□□□ -0.08
USP4-203ENST00000415188 CPQQ9Y646 472 aa14.56□□□□□ -0.08
USP4-203ENST00000415188 RNASEH2AO75792 299 aaKnown RBP14.55□□□□□ -0.08
USP4-203ENST00000415188 NPPAP01160 153 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 CYBBP04839 570 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 FESP07332 822 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 ZCCHC18P0CG32 403 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 CHRM3P20309 590 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 DRD1P21728 446 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 MSX2P35548 267 aaPredicted RBP14.55□□□□□ -0.08
USP4-203ENST00000415188 CSKP41240 450 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 RGS4P49798 205 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 CDKN1CP49918 316 aaPredicted RBP14.55□□□□□ -0.08
USP4-203ENST00000415188 CLCN7P51798 805 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 ERVK-8P63133 956 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 SLC7A9P82251 487 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 SPEM2Q0P670 501 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 GRB7Q14451 532 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 INPP5AQ14642 412 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 RBBP7Q16576 425 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 C6orf10Q5SRN2 563 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 MPP7Q5T2T1 576 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 IL23RQ5VWK5 629 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 LAIR1Q6GTX8 287 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 METTL2BQ6P1Q9 378 aaKnown RBP14.55□□□□□ -0.08
USP4-203ENST00000415188 ERMP1Q7Z2K6 904 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 SYVN1Q86TM6 617 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 RETREG3Q86VR2 466 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 AHI1Q8N157 1196 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 OR2T34Q8NGX1 318 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 OR2T3Q8NH03 318 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 PIH1D2Q8WWB5 315 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 EPB41L1Q9H4G0 881 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 ARMC1Q9NVT9 282 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 APPL1Q9UKG1 709 aa14.55□□□□□ -0.08
USP4-203ENST00000415188 HELZP42694 1942 aaKnown RBP14.54□□□□□ -0.08
USP4-203ENST00000415188 A0A1W2PP18 115 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 ANTXRLA6NF34 631 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 IFRD1O00458 451 aaPredicted RBP14.54□□□□□ -0.08
USP4-203ENST00000415188 E2F3O00716 465 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 PPP6CO00743 305 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 HTRA2O43464 458 aaPredicted RBP14.54□□□□□ -0.08
USP4-203ENST00000415188 OR1I1O60431 355 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 GREM1O60565 184 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 EEDO75530 441 aaKnown RBP14.54□□□□□ -0.08
USP4-203ENST00000415188 MT-CO1P00395 513 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 LINC00032P0C843 101 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 PFKLP17858 780 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 TCN1P20061 433 aaPredicted RBP14.54□□□□□ -0.08
USP4-203ENST00000415188 ITGALP20701 1170 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 CAPN3P20807 821 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 HOXA6P31267 233 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 SH3BGRP55822 239 aaPredicted RBP14.54□□□□□ -0.08
USP4-203ENST00000415188 KCNK10P57789 538 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 RALGDSQ12967 914 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 RCAN2Q14206 197 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 TLR1Q15399 786 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 GAB4Q2WGN9 574 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 LCN8Q6JVE9 175 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 FBXL19Q6PCT2 694 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 LINGO4Q6UY18 593 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 RNF165Q6ZSG1 346 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 SNX20Q7Z614 316 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 WDR5BQ86VZ2 330 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 GALNT13Q8IUC8 556 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 CPNE9Q8IYJ1 553 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 RBFAQ8N0V3 343 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 PDPRQ8NCN5 879 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 FAM156AQ8NDB6 213 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 EEF1AKMT1Q8WVE0 214 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 ATP6V1E2Q96A05 226 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 KCNA7Q96RP8 456 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 SLC30A3Q99726 388 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 CLPBQ9H078 707 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 C8orf4Q9NR00 106 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 DLL3Q9NYJ7 618 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 CFAP97Q9P2B7 532 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 MAP10Q9P2G4 905 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 LEF1Q9UJU2 399 aaPredicted RBP14.54□□□□□ -0.08
USP4-203ENST00000415188 SLC8A2Q9UPR5 921 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 BTRCQ9Y297 605 aa14.54□□□□□ -0.08
USP4-203ENST00000415188 PCDHB9Q9Y5E1 797 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms