RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 LATS1O95835 1130 aa9.17□□□□□ -0.94
VPS13A-203ENST00000360280 CDH12P55289 794 aa9.17□□□□□ -0.94
VPS13A-203ENST00000360280 GNMTQ14749 295 aa9.17□□□□□ -0.94
VPS13A-203ENST00000360280 NIPA1Q7RTP0 329 aa9.17□□□□□ -0.94
VPS13A-203ENST00000360280 CAMK1GQ96NX5 476 aa9.17□□□□□ -0.94
VPS13A-203ENST00000360280 AGO1Q9UL18 857 aaKnown RBP9.17□□□□□ -0.94
VPS13A-203ENST00000360280 RHPN2P1A8MT19 583 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 LACTBL1A8MY62 500 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 SRPRAP08240 638 aaKnown RBP9.16□□□□□ -0.94
VPS13A-203ENST00000360280 KELP23276 732 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 TLE2Q04725 743 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 DUPD1Q68J44 220 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 SCGB1C1Q8TD33 95 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 TUBA1CQ9BQE3 449 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 NDC1Q9BTX1 674 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 NR2E1Q9Y466 385 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 ADAMTS3O15072 1205 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 ZNF81P51508 661 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 TPRG1LQ5T0D9 272 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 FAM183BPQ6ZVS7 135 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 TSSK3Q96PN8 268 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 BORCS7-ASMTA0A0B4J1R7 106 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 BPGMP07738 259 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 GOT1P17174 413 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 GNA12Q03113 381 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 ZNF267Q14586 743 aaPredicted RBP9.16□□□□□ -0.94
VPS13A-203ENST00000360280 MAD2L1BPQ15013 274 aaPredicted RBP9.16□□□□□ -0.94
VPS13A-203ENST00000360280 ZBED6CLQ96FA7 236 aaPredicted RBP9.16□□□□□ -0.94
VPS13A-203ENST00000360280 PCDHGC3Q9UN70 934 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 TESMINQ9Y4I5 508 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 FMN2Q9NZ56 1722 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 RBM47A0AV96 593 aaKnown RBP9.16□□□□□ -0.94
VPS13A-203ENST00000360280 NARSO43776 548 aaKnown RBP9.16□□□□□ -0.94
VPS13A-203ENST00000360280 MPP1Q00013 466 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 TARDBPQ13148 414 aaKnown RBP eCLIP9.16□□□□□ -0.944e-7■■■■□ 26.1
VPS13A-203ENST00000360280 SYT4Q9H2B2 425 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 ASAH2Q9NR71 780 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 SAMD14Q8IZD0 417 aaPredicted RBP9.16□□□□□ -0.94
VPS13A-203ENST00000360280 LINC00471Q8N535 108 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 KLHL6Q8WZ60 621 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 HDAC2Q92769 488 aaKnown RBP9.16□□□□□ -0.94
VPS13A-203ENST00000360280 OR5B12Q96R08 314 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 hCG_1818297A0A087WSY0 165 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 LYPLA1O75608 230 aaPredicted RBP9.16□□□□□ -0.94
VPS13A-203ENST00000360280 NRG1Q02297 640 aaPredicted RBP9.16□□□□□ -0.94
VPS13A-203ENST00000360280 GTF2H2Q13888 395 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 GTF2H2CQ6P1K8 395 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 SLC16A9Q7RTY1 509 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 RAVER1Q8IY67 606 aaKnown RBP9.16□□□□□ -0.94
VPS13A-203ENST00000360280 SLC35C1Q96A29 364 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 OR10A4Q9H209 315 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 TMPRSS4Q9NRS4 437 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 C19orf12Q9NSK7 152 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 NDUFAF4Q9P032 175 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 MROH2AA6NES4 1674 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 A0A1W2PRQ8 180 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 CHAF1BQ13112 559 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 ADGRE1Q14246 886 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 ADGRD2Q7Z7M1 963 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 ZNF676Q8N7Q3 588 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 RBM18Q96H35 190 aaKnown RBP9.16□□□□□ -0.94
VPS13A-203ENST00000360280 CDT1Q9H211 546 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 HIF3AQ9Y2N7 669 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 DLG2Q15700 870 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 COL28A1Q2UY09 1125 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 DUS1LQ6P1R4 473 aaKnown RBP9.16□□□□□ -0.94
VPS13A-203ENST00000360280 SLC37A3Q8NCC5 494 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 NINJ1Q92982 152 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 CCDC120Q96HB5 630 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 C13orf42A0A1B0GVH6 325 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 PRORSD1PA6NEY8 169 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 TSTD3H0UI37 97 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 BNIP1Q12981 228 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 KCTD19Q17RG1 926 aaPredicted RBP9.16□□□□□ -0.94
VPS13A-203ENST00000360280 GARNL3Q5VVW2 1013 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 SNRNP25Q9BV90 132 aaKnown RBP9.16□□□□□ -0.94
VPS13A-203ENST00000360280 IMP3Q9NV31 184 aaKnown RBP9.16□□□□□ -0.94
VPS13A-203ENST00000360280 DNAJB9Q9UBS3 223 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 POFUT2Q9Y2G5 429 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 CXCR6O00574 342 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 TPSB2P20231 275 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 GSTM3P21266 225 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 CDK18Q07002 472 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 HSPB3Q12988 150 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 BTG3Q14201 252 aaPredicted RBP9.16□□□□□ -0.94
VPS13A-203ENST00000360280 TPSAB1Q15661 275 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 CES5AQ6NT32 575 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 SCIMPQ6UWF3 145 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 NPNTQ6UXI9 565 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 FAM71AQ8IYT1 594 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 EIF5A2Q9GZV4 153 aaKnown RBP9.16□□□□□ -0.94
VPS13A-203ENST00000360280 LOXHD1Q8IVV2 1947 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 ATAD3CQ5T2N8 411 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 COMTD1Q86VU5 262 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 SMARCD2Q92925 531 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.16□□□□□ -0.94
VPS13A-203ENST00000360280 MALT1Q9UDY8 824 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 IFNA10P01566 189 aa9.16□□□□□ -0.94
VPS13A-203ENST00000360280 YAP1P46937 504 aaKnown RBP9.16□□□□□ -0.94
VPS13A-203ENST00000360280 ST3GAL4Q11206 333 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms