RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 NUAK2Q9H093 628 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SYTL2Q9HCH5 934 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CACNA2D2Q9NY47 1150 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 LOC100506127A0A0U1RQW1 187 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ZCWPW2A0A1B0GU75 182 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 M0QX08 132 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PPP6CO00743 305 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ABCB1P08183 1280 aaPredicted RBP10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PRDX6P30041 224 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 HOXD11P31277 338 aaPredicted RBP10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SOX6P35712 828 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 HSPA7P48741 367 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MERTKQ12866 999 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 GTF2H3Q13889 308 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PPP1R3AQ16821 1122 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MSANTD2Q6P1R3 559 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ZDHHC13Q8IUH4 622 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ARMC8Q8IUR7 673 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 METTL25Q8N6Q8 603 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 GRPEL2Q8TAA5 225 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ZNF420Q8TAQ5 688 aaPredicted RBP10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 POF1BQ8WVV4 589 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 EFHD2Q96C19 240 aaPredicted RBP10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MYO19Q96H55 970 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 NSMCE2Q96MF7 247 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 KCTD14Q9BQ13 255 aaPredicted RBP10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MTIF3Q9H2K0 278 aaKnown RBP10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TOR3AQ9H497 397 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 POLE4Q9NR33 117 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MARCH5Q9NX47 278 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MOCS1Q9NZB8 636 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 EIF2B4Q9UI10 523 aaKnown RBP10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ANAPC2Q9UJX6 822 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ARID1BQ8NFD5 2236 aaPredicted RBP10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PRLP01236 227 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 KLKB1P03952 638 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ZNF7P17097 686 aaPredicted RBP10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 LAG3P18627 525 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 HLA-DPA1P20036 260 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 AGTR2P50052 363 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 IL10RBQ08334 325 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SERINC3Q13530 473 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 DSC3Q14574 896 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 HERC3Q15034 1050 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 AMER2Q8N7J2 671 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ACMSDQ8TDX5 336 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SCAMP4Q969E2 229 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TCEAL4Q96EI5 215 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 NEK6Q9HC98 313 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 AASDHPPTQ9NRN7 309 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 GVINP1Q7Z2Y8 2422 aa10.59□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TRBV23OR9-2A0A075B6M9 112 aa10.58□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FFAR2O15552 330 aa10.58□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 RPP40O75818 363 aaKnown RBP10.58□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FUCA1P04066 466 aa10.58□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SNRPB2P08579 225 aaKnown RBP10.58□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 COL6A2P12110 1019 aa10.58□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CDH4P55283 916 aa10.58□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 YBEYP58557 167 aaPredicted RBP10.58□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TUBA3CQ13748 450 aa10.58□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CRY1Q16526 586 aa10.58□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SDE2Q6IQ49 451 aa10.58□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 LRRC49Q8IUZ0 686 aa10.58□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SLC15A3Q8IY34 581 aa10.58□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MRPL57Q9BQC6 102 aaKnown RBP10.58□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SMPD3Q9NY59 655 aaPredicted RBP10.58□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TMEM9Q9P0T7 183 aa10.58□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ERGIC3Q9Y282 383 aa10.58□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 RAP2CQ9Y3L5 183 aa10.58□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PRKAB1Q9Y478 270 aa10.58□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 HS6ST1O60243 411 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 HSMCR30P0CW71 290 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ILF2Q12905 390 aaKnown RBP10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 GRM2Q14416 872 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RAB39AQ14964 217 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CEP78Q5JTW2 689 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CCNYL2Q5T2Q4 361 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 KBTBD6Q86V97 674 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RELL1Q8IUW5 271 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ANKRD49Q8WVL7 239 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ZBTB18Q99592 522 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 C11orf49Q9H6J7 331 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ATP13A3Q9H7F0 1226 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 USE1Q9NZ43 259 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 MTRRQ9UBK8 725 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TRAF6Q9Y4K3 522 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SPO11Q9Y5K1 396 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 KRT87PA6NCN2 255 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 UPK3BL1B0FP48 263 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 UPK3BL2E5RIL1 263 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 H0Y858 1186 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PLK4O00444 970 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TSPAN4O14817 238 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TGM5O43548 720 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 IPO13O94829 963 aaKnown RBP10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 VIPR2P41587 438 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CLCN5P51795 746 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SLC18A2Q05940 514 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 VPS26BQ4G0F5 336 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 LY6G5CQ5SRR4 150 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms