RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ECH1Q13011 328 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 GPM6BQ13491 265 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF234Q14588 700 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 FAM110CQ1W6H9 321 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 SLC8B1Q6J4K2 584 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 ZCCHC23Q6ZST2 131 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 GHDCQ8N2G8 530 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 GPR151Q8TDV0 419 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 MED28Q9H204 178 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 PTGES2Q9H7Z7 377 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 NCDNQ9UBB6 729 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF282Q9UDV7 671 aaPredicted RBP6.77□□□□□ -1.33
SCN1A-204ENST00000423058 C14orf166Q9Y224 244 aaKnown RBP6.77□□□□□ -1.33
SCN1A-204ENST00000423058 BTRCQ9Y297 605 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 PTPRUQ92729 1446 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 CPED1A4D0V7 1026 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 E9PAM4 449 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 TSPAN1O60635 241 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 HOXB9P17482 250 aaPredicted RBP6.77□□□□□ -1.33
SCN1A-204ENST00000423058 UGT1A1P22309 533 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 SHMT1P34896 483 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 GTF2H2Q13888 395 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 E2F2Q14209 437 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 SPIN3Q5JUX0 258 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 GTF2H2CQ6P1K8 395 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 PLET1Q6UQ28 207 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 ZCCHC10Q8TBK6 192 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 NUS1Q96E22 293 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 MARK4Q96L34 752 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 ERMAPQ96PL5 475 aaPredicted RBP6.77□□□□□ -1.33
SCN1A-204ENST00000423058 C11orf49Q9H6J7 331 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 A0A075B6Q4 140 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 TRIM64CA6NLI5 447 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 HDAC3O15379 428 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 IRAK2O43187 625 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 NME6O75414 186 aaPredicted RBP6.77□□□□□ -1.33
SCN1A-204ENST00000423058 COL6A2P12110 1019 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 CPN2P22792 545 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 ITPKAP23677 461 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 MAXP61244 160 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 TUBA4AP68366 448 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 FUT10Q6P4F1 479 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 YTHDF3Q7Z739 585 aaKnown RBP6.77□□□□□ -1.33
SCN1A-204ENST00000423058 SLC44A3Q8N4M1 653 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 PCDH20Q8N6Y1 951 aaKnown RBP6.77□□□□□ -1.33
SCN1A-204ENST00000423058 RNF148Q8N7C7 305 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 MINDY2Q8NBR6 621 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 TMEM161BQ8NDZ6 487 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 PLEKHG4BQ96PX9 1271 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 MAGEH1Q9H213 219 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 METTL8Q9H825 291 aaKnown RBP6.77□□□□□ -1.33
SCN1A-204ENST00000423058 MED11Q9P086 117 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 ATPIF1Q9UII2 106 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 PACSIN3Q9UKS6 424 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 MAU2Q9Y6X3 613 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 NRXN1Q9ULB1 1477 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 SPATA31C2B4DYI2 1134 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 FAM86B1E9PN63 330 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 CLDN5O00501 218 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 ABHD2P08910 425 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 FAM86B2P0C5J1 330 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 GNAZP19086 355 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 NDST2P52849 883 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 ANTXR2P58335 489 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 ARPC4P59998 168 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 TXNL4AP83876 142 aaKnown RBP6.77□□□□□ -1.33
SCN1A-204ENST00000423058 NAE1Q13564 534 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 C3orf33Q6P1S2 294 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 TMPPEQ6ZT21 453 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 USP49Q70CQ1 688 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 SLC9B2Q86UD5 537 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 ZZZ3Q8IYH5 903 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 C2orf73Q8N5S3 287 aaPredicted RBP6.77□□□□□ -1.33
SCN1A-204ENST00000423058 ZBTB45Q96K62 511 aaPredicted RBP6.77□□□□□ -1.33
SCN1A-204ENST00000423058 ASPNQ9BXN1 380 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 NIFKQ9BYG3 293 aaKnown RBP6.77□□□□□ -1.33
SCN1A-204ENST00000423058 DDX20Q9UHI6 824 aaKnown RBP6.77□□□□□ -1.33
SCN1A-204ENST00000423058 AGPSO00116 658 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 TNFRSF11BO00300 401 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 PPEF2O14830 753 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 IRF6O14896 467 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 WASP42768 502 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 DGKGP49619 791 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 GTF2IRD2BQ6EKJ0 949 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 GTF2IRD2Q86UP8 949 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 CEP97Q8IW35 865 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 ARHGAP12Q8IWW6 846 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 MRPL41Q8IXM3 137 aaKnown RBP6.76□□□□□ -1.33
SCN1A-204ENST00000423058 CRYBG2Q8N1P7 616 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 FBXW8Q8N3Y1 598 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 FTMTQ8N4E7 242 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 PYDC1Q8WXC3 89 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 RGMAQ96B86 450 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 MFSD3Q96ES6 412 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 B3GNT4Q9C0J1 378 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 RHOJQ9H4E5 214 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 SLC32A1Q9H598 525 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 METTL7AQ9H8H3 244 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 WASF2Q9Y6W5 498 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 DCCP43146 1447 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms