RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 TMEM102Q8N9M5 508 aaPredicted RBP11.75□□□□□ -0.53
USP1-201ENST00000339950 TRPV3Q8NET8 790 aa11.75□□□□□ -0.53
USP1-201ENST00000339950 PSMA8Q8TAA3 256 aa11.75□□□□□ -0.53
USP1-201ENST00000339950 CD99L2Q8TCZ2 262 aa11.75□□□□□ -0.53
USP1-201ENST00000339950 SORCS1Q8WY21 1168 aa11.75□□□□□ -0.53
USP1-201ENST00000339950 SLC47A1Q96FL8 570 aa11.75□□□□□ -0.53
USP1-201ENST00000339950 TSGA13Q96PP4 275 aa11.75□□□□□ -0.53
USP1-201ENST00000339950 HOPXQ9BPY8 73 aaPredicted RBP11.75□□□□□ -0.53
USP1-201ENST00000339950 TPK1Q9H3S4 243 aa11.75□□□□□ -0.53
USP1-201ENST00000339950 TMEM161AQ9NX61 479 aa11.75□□□□□ -0.53
USP1-201ENST00000339950 SUCOQ9UBS9 1254 aaKnown RBP11.75□□□□□ -0.53
USP1-201ENST00000339950 SLC8A2Q9UPR5 921 aa11.75□□□□□ -0.53
USP1-201ENST00000339950 LY75O60449 1722 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 BRWD3Q6RI45 1802 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 TAF4O00268 1085 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 RFXANKO14593 260 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 CDK4P11802 303 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 CRATP43155 626 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 OR4F3Q6IEY1 312 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 AHSA2Q719I0 299 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 LARP4Q71RC2 724 aaKnown RBP eCLIP11.74□□□□□ -0.531e-6■■■□□ 19.2
USP1-201ENST00000339950 CMTM8Q8IZV2 173 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 ZNF540Q8NDQ6 660 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 ARRDC2Q8TBH0 407 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 WBP2Q969T9 261 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 TRMOQ9BU70 441 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 SAMHD1Q9Y3Z3 626 aaKnown RBP11.74□□□□□ -0.53
USP1-201ENST00000339950 THSD7AQ9UPZ6 1657 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 PRSS51A0A1B0GVH4 220 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 TMEM247A6NEH6 219 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 M0R129 80 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 THRBP10828 461 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 CKBP12277 381 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 ALOX15P16050 662 aaPredicted RBP11.74□□□□□ -0.53
USP1-201ENST00000339950 GPX3P22352 226 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 RPIAP49247 311 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 INPP1P49441 399 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 PRIM2P49643 509 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 TBPL2Q6SJ96 375 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 SFRP1Q8N474 314 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 GANCQ8TET4 914 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 FUBP1Q96AE4 644 aaKnown RBP11.74□□□□□ -0.53
USP1-201ENST00000339950 REXO5Q96IC2 774 aaKnown RBP11.74□□□□□ -0.53
USP1-201ENST00000339950 SLC22A12Q96S37 553 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 TRIM39Q9HCM9 518 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 H0Y858 1186 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 MLYCDO95822 493 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 CCNA2P20248 432 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 KPNA1P52294 538 aaPredicted RBP11.74□□□□□ -0.53
USP1-201ENST00000339950 ACLYP53396 1101 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 HTRA3P83110 453 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 TNK2Q07912 1038 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 CBX2Q14781 532 aaPredicted RBP11.74□□□□□ -0.53
USP1-201ENST00000339950 KLHL35Q6PF15 583 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 CRTC3Q6UUV7 619 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 SERINC5Q86VE9 423 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 EID3Q8N140 333 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 UBE2J2Q8N2K1 259 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 TMEM151AQ8N4L1 468 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 PCSK9Q8NBP7 692 aaKnown RBP11.74□□□□□ -0.53
USP1-201ENST00000339950 CGREF1Q99674 301 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 TOR3AQ9H497 397 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 MEAF6Q9HAF1 191 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 LRTM1Q9HBL6 345 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 CFAP97Q9P2B7 532 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 SLC22A14Q9Y267 594 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 PRKAB1Q9Y478 270 aa11.74□□□□□ -0.53
USP1-201ENST00000339950 A0A1W2PP18 115 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 COCHO43405 550 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 TPST2O60704 377 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 NADKO95544 446 aaPredicted RBP11.73□□□□□ -0.53
USP1-201ENST00000339950 UROSP10746 265 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 MAP2K4P45985 399 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 MEF2AQ02078 507 aaPredicted RBP11.73□□□□□ -0.53
USP1-201ENST00000339950 SFSWAPQ12872 951 aaKnown RBP11.73□□□□□ -0.53
USP1-201ENST00000339950 PARP15Q460N3 678 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 RSBN1Q5VWQ0 802 aaPredicted RBP11.73□□□□□ -0.53
USP1-201ENST00000339950 UBE2R2Q712K3 238 aaPredicted RBP11.73□□□□□ -0.53
USP1-201ENST00000339950 GOLGA7Q7Z5G4 137 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 R3HCC1LQ7Z5L2 792 aaKnown RBP11.73□□□□□ -0.53
USP1-201ENST00000339950 OR5AK3PQ8NH89 298 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 HMGCLL1Q8TB92 370 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 RORBQ92753 470 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 UPF1Q92900 1129 aaKnown RBP eCLIP11.73□□□□□ -0.53
USP1-201ENST00000339950 SLCO4A1Q96BD0 722 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 ISOC1Q96CN7 298 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 OTUB1Q96FW1 271 aaPredicted RBP11.73□□□□□ -0.53
USP1-201ENST00000339950 RANBP9Q96S59 729 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 PCDHB8Q9UN66 801 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 MGAT4DA6NG13 374 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 ZNF487B1APH4 448 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 SEPT4O43236 478 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 CYP7B1O75881 506 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 RFX3P48380 749 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 DNASE1L3Q13609 305 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 RAB39AQ14964 217 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 TBC1D25Q3MII6 688 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 PDE12Q6L8Q7 609 aaKnown RBP11.73□□□□□ -0.53
USP1-201ENST00000339950 LSRQ86X29 649 aaPredicted RBP11.73□□□□□ -0.53
USP1-201ENST00000339950 TNIP2Q8NFZ5 429 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms