RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 KLHL33A6NCF5 533 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 CAPN8A6NHC0 703 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 DHFRP00374 187 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 DHPSP49366 369 aaPredicted RBP12.46□□□□□ -0.41
SDC3-201ENST00000336798 DRG2P55039 364 aaKnown RBP12.46□□□□□ -0.41
SDC3-201ENST00000336798 PIGXQ8TBF5 258 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 TRIM2Q9C040 744 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 LRRC4CQ9HCJ2 640 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 ABCB8Q9NUT2 735 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 MIOSQ9NXC5 875 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 CARNS1A5YM72 827 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 ANXA2P2A6NMY6 339 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 E7ENX8 843 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 IFNW1P05000 195 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 ANXA2P07355 339 aaKnown RBP12.46□□□□□ -0.42
SDC3-201ENST00000336798 PBX3P40426 434 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 QPCTQ16769 361 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 UAP1L1Q3KQV9 507 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 PHF19Q5T6S3 580 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 TNFAIP8L2Q6P589 184 aaPredicted RBP12.46□□□□□ -0.42
SDC3-201ENST00000336798 CRELD1Q96HD1 420 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 OR2AG1Q9H205 316 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 FKBPLQ9UIM3 349 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 PCDHB1Q9Y5F3 818 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 ARL5AQ9Y689 179 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 CFAP20Q9Y6A4 193 aaKnown RBP12.46□□□□□ -0.42
SDC3-201ENST00000336798 PDPK1O15530 556 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 RGS10O43665 173 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 TULP3O75386 442 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 DRD4P21917 467 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 CPN2P22792 545 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 DGKEP52429 567 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 CLCQ05315 142 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 DNASE1L3Q13609 305 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 RUNDC3AQ59EK9 446 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 OGFOD2Q6N063 350 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 YTHDF3Q7Z739 585 aaKnown RBP12.46□□□□□ -0.42
SDC3-201ENST00000336798 SPPL2BQ8TCT7 592 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 HEXDCQ8WVB3 486 aa12.46□□□□□ -0.42
SDC3-201ENST00000336798 BAZ2BQ9UIF8 2168 aaKnown RBP12.46□□□□□ -0.42
SDC3-201ENST00000336798 ZSCAN5BA6NJL1 495 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 NME6O75414 186 aaPredicted RBP12.45□□□□□ -0.42
SDC3-201ENST00000336798 IL7RP16871 459 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 SYN1P17600 705 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 ADRA1BP35368 520 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 EIF1AXP47813 144 aaKnown RBP12.45□□□□□ -0.42
SDC3-201ENST00000336798 SMARCB1Q12824 385 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 GRSF1Q12849 480 aaKnown RBP eCLIP12.45□□□□□ -0.42
SDC3-201ENST00000336798 OR4C6Q8NH72 309 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 OR10A6Q8NH74 314 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 COMMD4Q9H0A8 199 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 NR2E1Q9Y466 385 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 ARL5CA6NH57 179 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 MID1O15344 667 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 B3GALT2O43825 422 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 THRBP10828 461 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 GRK6P43250 576 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 COL9A2Q14055 689 aaPredicted RBP12.45□□□□□ -0.42
SDC3-201ENST00000336798 FASTKD3Q14CZ7 662 aaKnown RBP12.45□□□□□ -0.42
SDC3-201ENST00000336798 FUT10Q6P4F1 479 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 ZNF611Q8N823 705 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 FAM156AQ8NDB6 213 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 AUTS2Q8WXX7 1259 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 MFSD3Q96ES6 412 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 SPATA31C1P0DKV0 1188 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 TTKP33981 857 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 PRKCIP41743 596 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 ZACNQ401N2 412 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 SLC24A5Q71RS6 500 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 NUP54Q7Z3B4 507 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 SPERTQ8NA61 448 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 GPR20Q99678 358 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 MRPS30Q9NP92 439 aaKnown RBP12.45□□□□□ -0.42
SDC3-201ENST00000336798 PARPBPQ9NWS1 579 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 TVP23BQ9NYZ1 205 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 RBM47A0AV96 593 aaKnown RBP12.45□□□□□ -0.42
SDC3-201ENST00000336798 OR1I1O60431 355 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 SCGB1D2O95969 90 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 ABHD2P08910 425 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 ECHS1P30084 290 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 ARL3P36405 182 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 RPL5P46777 297 aaKnown RBP12.45□□□□□ -0.42
SDC3-201ENST00000336798 DGKGP49619 791 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 MAPK14Q16539 360 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 ENPP7Q6UWV6 458 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 SLC51AQ86UW1 340 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 CPNE9Q8IYJ1 553 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 HDAC2Q92769 488 aaKnown RBP12.45□□□□□ -0.42
SDC3-201ENST00000336798 PSMG2Q969U7 264 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 ZFP3Q96NJ6 502 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 CDK15Q96Q40 435 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 FEM1AQ9BSK4 669 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 FKBP7Q9Y680 259 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 PTPRUQ92729 1446 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 COL5A2P05997 1499 aaPredicted RBP12.45□□□□□ -0.42
SDC3-201ENST00000336798 IRGMA1A4Y4 181 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 TMEM88BA6NKF7 163 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 BTN3A2P78410 334 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 KLF10Q13118 480 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 LRRC55Q6ZSA7 311 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms