RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 GRM3Q14832 879 aa12.83□□□□□ -0.36
MSH2-201ENST00000233146 COQ5Q5HYK3 327 aa12.83□□□□□ -0.36
MSH2-201ENST00000233146 CLLU1Q5K131 121 aa12.83□□□□□ -0.36
MSH2-201ENST00000233146 PRSS36Q5K4E3 855 aa12.83□□□□□ -0.36
MSH2-201ENST00000233146 RASAL3Q86YV0 1011 aa12.83□□□□□ -0.36
MSH2-201ENST00000233146 ABI1Q8IZP0 508 aa12.83□□□□□ -0.36
MSH2-201ENST00000233146 SVOPLQ8N434 492 aa12.83□□□□□ -0.36
MSH2-201ENST00000233146 TMEM161BQ8NDZ6 487 aa12.83□□□□□ -0.36
MSH2-201ENST00000233146 DNAJB14Q8TBM8 379 aa12.83□□□□□ -0.36
MSH2-201ENST00000233146 FRS2Q8WU20 508 aa12.83□□□□□ -0.36
MSH2-201ENST00000233146 RBPMSQ93062 196 aaKnown RBP12.83□□□□□ -0.36
MSH2-201ENST00000233146 Q96MT0 163 aa12.83□□□□□ -0.36
MSH2-201ENST00000233146 CAMKK2Q96RR4 588 aa12.83□□□□□ -0.36
MSH2-201ENST00000233146 XPR1Q9UBH6 696 aa12.83□□□□□ -0.36
MSH2-201ENST00000233146 AASSQ9UDR5 926 aa12.83□□□□□ -0.36
MSH2-201ENST00000233146 GMPPBQ9Y5P6 360 aa12.83□□□□□ -0.36
MSH2-201ENST00000233146 GMDSO60547 372 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 HUS1O60921 280 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 RFPL3O75679 317 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 LTB4RQ15722 352 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 DPP8Q6V1X1 898 aaPredicted RBP12.82□□□□□ -0.36
MSH2-201ENST00000233146 CENPLQ8N0S6 344 aaPredicted RBP12.82□□□□□ -0.36
MSH2-201ENST00000233146 C3orf58Q8NDZ4 430 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 PIGBQ92521 554 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 FAM149B1Q96BN6 582 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 AP2M1Q96CW1 435 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 NSMCE2Q96MF7 247 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 FAM213AQ9BRX8 229 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 PPIL3Q9H2H8 161 aaKnown RBP12.82□□□□□ -0.36
MSH2-201ENST00000233146 SAV1Q9H4B6 383 aaPredicted RBP12.82□□□□□ -0.36
MSH2-201ENST00000233146 SLC52A3Q9NQ40 469 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 EMC3Q9P0I2 261 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 DPP7Q9UHL4 492 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 INVSQ9Y283 1065 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 STX16O14662 325 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 KPNA6O60684 536 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 RPLP0P05388 317 aaKnown RBP12.82□□□□□ -0.36
MSH2-201ENST00000233146 KCNC1P48547 511 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 APLP1P51693 650 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 DNAJB13P59910 316 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 GBX1Q14549 363 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 ANGPT1Q15389 498 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 TAB1Q15750 504 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 KIF19Q2TAC6 998 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 KDELC1Q6UW63 502 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 P3H2Q8IVL5 708 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 GDPD1Q8N9F7 314 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 SETD9Q8NE22 299 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 PCDH19Q8TAB3 1148 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 VPS39Q96JC1 886 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 DDX4Q9NQI0 724 aaKnown RBP12.82□□□□□ -0.36
MSH2-201ENST00000233146 TMOD3Q9NYL9 352 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 DNAJB9Q9UBS3 223 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 SLC39A10Q9ULF5 831 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 PCDHB5Q9Y5E4 795 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 V9GYH0 126 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 HS6ST1O60243 411 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 CYP7B1O75881 506 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 NTSR2O95665 410 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 TSPAN12O95859 305 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 ITGAMP11215 1152 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 ZP3P21754 424 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 RPS3P23396 243 aaKnown RBP eCLIP12.82□□□□□ -0.361e-6■■■■■ 31.9
MSH2-201ENST00000233146 HOXA13P31271 388 aaPredicted RBP12.82□□□□□ -0.36
MSH2-201ENST00000233146 RARRES1P49788 294 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 DGKQP52824 942 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 WNT7BP56706 349 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 FLI1Q01543 452 aaPredicted RBP12.82□□□□□ -0.36
MSH2-201ENST00000233146 TRIM60Q495X7 471 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 FAM98BQ52LJ0 330 aaKnown RBP12.82□□□□□ -0.36
MSH2-201ENST00000233146 SOWAHCQ53LP3 525 aaPredicted RBP12.82□□□□□ -0.36
MSH2-201ENST00000233146 ZMAT1Q5H9K5 638 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 FAM26DQ5JW98 314 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 GPR139Q6DWJ6 353 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 LRFN4Q6PJG9 635 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 SLC46A3Q7Z3Q1 461 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 GALNT10Q86SR1 603 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 CCDC36Q8IYA8 594 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 DCP1BQ8IZD4 617 aaKnown RBP12.82□□□□□ -0.36
MSH2-201ENST00000233146 NLGN4YQ8NFZ3 816 aaPredicted RBP12.82□□□□□ -0.36
MSH2-201ENST00000233146 YIPF5Q969M3 257 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 ITCHQ96J02 903 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 TEPSINQ96N21 525 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 OMDQ99983 421 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 TBCDQ9BTW9 1192 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 WDR11Q9BZH6 1224 aa12.82□□□□□ -0.36
MSH2-201ENST00000233146 TMEFF2Q9UIK5 374 aaPredicted RBP12.82□□□□□ -0.36
MSH2-201ENST00000233146 A0A075B6Q4 140 aa12.81□□□□□ -0.36
MSH2-201ENST00000233146 KHNYNO15037 678 aaKnown RBP12.81□□□□□ -0.36
MSH2-201ENST00000233146 PRPSAP2O60256 369 aa12.81□□□□□ -0.36
MSH2-201ENST00000233146 CELF2O95319 508 aaKnown RBP12.81□□□□□ -0.36
MSH2-201ENST00000233146 F9P00740 461 aa12.81□□□□□ -0.36
MSH2-201ENST00000233146 TNNI1P19237 187 aa12.81□□□□□ -0.36
MSH2-201ENST00000233146 SOX6P35712 828 aa12.81□□□□□ -0.36
MSH2-201ENST00000233146 SCN1BQ07699 218 aa12.81□□□□□ -0.36
MSH2-201ENST00000233146 GPR19Q15760 415 aa12.81□□□□□ -0.36
MSH2-201ENST00000233146 ZNF79Q15937 498 aa12.81□□□□□ -0.36
MSH2-201ENST00000233146 FBXO43Q4G163 708 aa12.81□□□□□ -0.36
MSH2-201ENST00000233146 HABP4Q5JVS0 413 aaKnown RBP12.81□□□□□ -0.36
MSH2-201ENST00000233146 SLC35F1Q5T1Q4 408 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms