RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ABCB8Q9NUT2 735 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 FBXO34Q9NWN3 711 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 ZSCAN32Q9NX65 697 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 FAM30AQ9NZY2 134 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 JKAMPQ9P055 326 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 CFAP97Q9P2B7 532 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 TUBGCP4Q9UGJ1 667 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 RAPGEFL1Q9UHV5 662 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 APPL1Q9UKG1 709 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 ITGA11Q9UKX5 1188 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 SUFUQ9UMX1 484 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 PLEKHM1Q9Y4G2 1056 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 CLDN16Q9Y5I7 305 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 CDY1Q9Y6F8 540 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 DOCK8Q8NF50 2099 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 C2orf16Q68DN1 1984 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 PLXNA3P51805 1871 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 GOLGA6L10A0A0M3HER8 536 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 TRBC2A0A5B9 178 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 CDHR4A6H8M9 788 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 DRGXA6NNA5 263 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 KPNA7A9QM74 516 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 I3L4J1 428 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 CYB561D2O14569 222 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 PRPF4O43172 522 aaKnown RBP eCLIP6.11□□□□□ -1.43
VPS53-212ENST00000572259 KLRC4O43908 158 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 OAZ2O95190 189 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 SPATA31D3P0C874 917 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 DLATP10515 647 aaKnown RBP6.11□□□□□ -1.43
VPS53-212ENST00000572259 TPH1P17752 444 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 TRIM21P19474 475 aaKnown RBP6.11□□□□□ -1.43
VPS53-212ENST00000572259 CCNA2P20248 432 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 MCM3P25205 808 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 CASP1P29466 404 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 HOXA9P31269 272 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 CHN2P52757 468 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 EIF3BP55884 814 aaKnown RBP6.11□□□□□ -1.43
VPS53-212ENST00000572259 ARPP19P56211 112 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 UBE2HP62256 183 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 MYL7Q01449 175 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 GOLGA8DPQ0D2H9 430 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 PLD1Q13393 1074 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 TDGQ13569 410 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 ARHGEF7Q14155 803 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 INAQ16352 499 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 ZRANB3Q5FWF4 1079 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 COLEC12Q5KU26 742 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 C10orf76Q5T2E6 689 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 CST9LP1Q5W188 147 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 SLC8B1Q6J4K2 584 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 DENND1BQ6P3S1 775 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 Q6ZSN1 163 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 SPATA31D4Q6ZUB0 917 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 ERN2Q76MJ5 926 aaKnown RBP6.11□□□□□ -1.43
VPS53-212ENST00000572259 WDR49Q8IV35 697 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 DCP1BQ8IZD4 617 aaKnown RBP6.11□□□□□ -1.43
VPS53-212ENST00000572259 TMEM86AQ8N2M4 240 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 GUF1Q8N442 669 aaKnown RBP6.11□□□□□ -1.43
VPS53-212ENST00000572259 LRRC52Q8N7C0 313 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 C12orf76Q8N812 135 aaPredicted RBP6.11□□□□□ -1.43
VPS53-212ENST00000572259 ZNF366Q8N895 744 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 FAM71DQ8N9W8 422 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 PSMA8Q8TAA3 256 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 CCDC110Q8TBZ0 833 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 TBC1D15Q8TC07 691 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 TMEM174Q8WUU8 243 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 KCNE4Q8WWG9 221 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 EDAQ92838 391 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 C1QTNF1Q9BXJ1 281 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 FAM83DQ9H4H8 585 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 STN1Q9H668 368 aaKnown RBP6.11□□□□□ -1.43
VPS53-212ENST00000572259 SERINC1Q9NRX5 453 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 INTS13Q9NVM9 706 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 UTP6Q9NYH9 597 aaKnown RBP6.11□□□□□ -1.43
VPS53-212ENST00000572259 COX16Q9P0S2 106 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 HCN3Q9P1Z3 774 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 ZMAT5Q9UDW3 170 aaKnown RBP6.11□□□□□ -1.43
VPS53-212ENST00000572259 ANAPC2Q9UJX6 822 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 FBXW11Q9UKB1 542 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 CNOT11Q9UKZ1 510 aaKnown RBP6.11□□□□□ -1.43
VPS53-212ENST00000572259 PPIEQ9UNP9 301 aaKnown RBP6.11□□□□□ -1.43
VPS53-212ENST00000572259 AGAP1Q9UPQ3 857 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 SESN1Q9Y6P5 492 aa6.11□□□□□ -1.43
VPS53-212ENST00000572259 ATP8B3O60423 1300 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 AQP7P3A6NL99 342 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 J3KTA2 159 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 ZNF197O14709 1029 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 CETN3O15182 167 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 MAPK13O15264 365 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 DCXO43602 365 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 STX10O60499 249 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 CCNT2O60583 730 aaKnown RBP6.1□□□□□ -1.43
VPS53-212ENST00000572259 HNRNPCL1O60812 293 aaKnown RBP6.1□□□□□ -1.43
VPS53-212ENST00000572259 UNC5CO95185 931 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 OR2C1O95371 312 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 IFNB1P01574 187 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 NR3C1P04150 777 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 FYNP06241 537 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 SELLP14151 372 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 LHX1P48742 406 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms