RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 CDH1P12830 882 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 JAK1P23458 1154 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 MTPNP58546 118 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 HPCAP84074 193 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 PWP1Q13610 501 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 LHX8Q68G74 356 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 ABRAXAS1Q6UWZ7 409 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 OFCC1Q8IZS5 231 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 LKAAEAR1Q8TD35 194 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 GAB3Q8WWW8 586 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 VPS50Q96JG6 964 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 VN1R3Q9BXE9 311 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 BACE2Q9Y5Z0 518 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 RAD51BO15315 384 aa22.41■■□□□ 1.18
VPS53-211ENST00000571805 TBL1XO60907 577 aa22.41■■□□□ 1.18
VPS53-211ENST00000571805 RPS3P23396 243 aaKnown RBP eCLIP22.41■■□□□ 1.18
VPS53-211ENST00000571805 CTBSQ01459 385 aa22.41■■□□□ 1.18
VPS53-211ENST00000571805 PTRHD1Q6GMV3 140 aaKnown RBP22.41■■□□□ 1.18
VPS53-211ENST00000571805 FAM151BQ6UXP7 276 aa22.41■■□□□ 1.18
VPS53-211ENST00000571805 BDH2Q9BUT1 245 aa22.41■■□□□ 1.18
VPS53-211ENST00000571805 NPLQ9BXD5 320 aaPredicted RBP22.41■■□□□ 1.18
VPS53-211ENST00000571805 CLPBQ9H078 707 aa22.41■■□□□ 1.18
VPS53-211ENST00000571805 SOX17Q9H6I2 414 aaPredicted RBP22.41■■□□□ 1.18
VPS53-211ENST00000571805 DNMT3BQ9UBC3 853 aaKnown RBP22.41■■□□□ 1.18
VPS53-211ENST00000571805 VPS51Q9UID3 782 aa22.41■■□□□ 1.18
VPS53-211ENST00000571805 LOC101059915A0A1B0GWI6 518 aaPredicted RBP22.41■■□□□ 1.18
VPS53-211ENST00000571805 GOLGA8CPA6NN73 597 aa22.41■■□□□ 1.18
VPS53-211ENST00000571805 UPK1AO00322 258 aa22.41■■□□□ 1.18
VPS53-211ENST00000571805 PGLSO95336 258 aa22.41■■□□□ 1.18
VPS53-211ENST00000571805 S100BP04271 92 aaPredicted RBP22.41■■□□□ 1.18
VPS53-211ENST00000571805 ZNF7P17097 686 aaPredicted RBP22.41■■□□□ 1.18
VPS53-211ENST00000571805 HSPA7P48741 367 aa22.41■■□□□ 1.18
VPS53-211ENST00000571805 PLA2G4EQ3MJ16 856 aa22.41■■□□□ 1.18
VPS53-211ENST00000571805 MILR1Q7Z6M3 343 aa22.41■■□□□ 1.18
VPS53-211ENST00000571805 FAM126BQ8IXS8 530 aa22.41■■□□□ 1.18
VPS53-211ENST00000571805 EZH1Q92800 747 aaPredicted RBP22.41■■□□□ 1.18
VPS53-211ENST00000571805 ALG14Q96F25 216 aa22.41■■□□□ 1.18
VPS53-211ENST00000571805 AFF4Q9UHB7 1163 aaKnown RBP22.41■■□□□ 1.18
VPS53-211ENST00000571805 ZMYM5Q9UJ78 669 aa22.41■■□□□ 1.18
VPS53-211ENST00000571805 PRSS21Q9Y6M0 314 aa22.41■■□□□ 1.18
VPS53-211ENST00000571805 H0Y858 1186 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 SCAMP3O14828 347 aaKnown RBP22.4■■□□□ 1.18
VPS53-211ENST00000571805 HOXA2O43364 376 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 PRSS23O95084 383 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 PRAMEF1O95521 474 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 BMP1P13497 986 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 ITGB6P18564 788 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 ESRRGP62508 458 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 CRY1Q16526 586 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 ARMC12Q5T9G4 340 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 CHCHD4Q8N4Q1 142 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 MYO19Q96H55 970 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 ZNF583Q96ND8 569 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 CLSTN3Q9BQT9 956 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 TLR9Q9NR96 1032 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 SMPD4Q9NXE4 827 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 OARD1Q9Y530 152 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 HEMK1Q9Y5R4 338 aaPredicted RBP22.4■■□□□ 1.18
VPS53-211ENST00000571805 K7ERQ8 282 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 GUCA1CO95843 209 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 SP3Q02447 781 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 CLVS1Q8IUQ0 354 aaPredicted RBP22.4■■□□□ 1.18
VPS53-211ENST00000571805 B4GALNT2Q8NHY0 566 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 ISOC1Q96CN7 298 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 EBF1Q9UH73 591 aa22.4■■□□□ 1.18
VPS53-211ENST00000571805 ALDH1A1P00352 501 aa22.39■■□□□ 1.18
VPS53-211ENST00000571805 GGT1P19440 569 aa22.39■■□□□ 1.18
VPS53-211ENST00000571805 HMOX2P30519 316 aa22.39■■□□□ 1.18
VPS53-211ENST00000571805 PLD1Q13393 1074 aa22.39■■□□□ 1.18
VPS53-211ENST00000571805 LRRC43Q8N309 656 aa22.39■■□□□ 1.18
VPS53-211ENST00000571805 CLDN19Q8N6F1 224 aa22.39■■□□□ 1.18
VPS53-211ENST00000571805 WFDC5Q8TCV5 224 aa22.39■■□□□ 1.18
VPS53-211ENST00000571805 PPP3R2Q96LZ3 170 aa22.39■■□□□ 1.18
VPS53-211ENST00000571805 SRRDQ9UH36 339 aa22.39■■□□□ 1.18
VPS53-211ENST00000571805 PCDHGA11Q9Y5H2 935 aa22.39■■□□□ 1.18
VPS53-211ENST00000571805 ZNF701M0R085 212 aaPredicted RBP22.39■■□□□ 1.17
VPS53-211ENST00000571805 TULP3O75386 442 aa22.39■■□□□ 1.17
VPS53-211ENST00000571805 SLC2A4P14672 509 aa22.39■■□□□ 1.17
VPS53-211ENST00000571805 MSH3P20585 1137 aa22.39■■□□□ 1.17
VPS53-211ENST00000571805 EMP3P54852 163 aa22.39■■□□□ 1.17
VPS53-211ENST00000571805 LRRC23Q53EV4 343 aaPredicted RBP22.39■■□□□ 1.17
VPS53-211ENST00000571805 OR8J3Q8NGG0 315 aa22.39■■□□□ 1.17
VPS53-211ENST00000571805 FAM126AQ9BYI3 521 aaPredicted RBP22.39■■□□□ 1.17
VPS53-211ENST00000571805 VAPAQ9P0L0 249 aa22.39■■□□□ 1.17
VPS53-211ENST00000571805 GNPTGQ9UJJ9 305 aa22.39■■□□□ 1.17
VPS53-211ENST00000571805 ABLIM3O94929 683 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 SLC25A14O95258 325 aaPredicted RBP22.38■■□□□ 1.17
VPS53-211ENST00000571805 ANXA6P08133 673 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 CSKP41240 450 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 NFATC2Q13469 925 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 GPR180Q86V85 440 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 RNF168Q8IYW5 571 aaPredicted RBP22.38■■□□□ 1.17
VPS53-211ENST00000571805 RBFAQ8N0V3 343 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 ZNF461Q8TAF7 563 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 C17orf80Q9BSJ5 609 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 ASB8Q9H765 288 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 IL26Q9NPH9 171 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 SCN8AQ9UQD0 1980 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 H0YAE9 185 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 DFNA5O60443 496 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms