RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 GSTM4Q03013 218 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 SLMAPQ14BN4 828 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 BRD3Q15059 726 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 NR0B2Q15466 257 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 WDR93Q6P2C0 686 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 GUSBP11Q6P575 273 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 ABRAXAS1Q6UWZ7 409 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 WASH2PQ6VEQ5 465 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 STRA8Q7Z7C7 330 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 SLC26A11Q86WA9 606 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 VRK3Q8IV63 474 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 SFRP1Q8N474 314 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 ACVR1CQ8NER5 493 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 GABPB2Q8TAK5 448 aaPredicted RBP21.33■■□□□ 1.01
SNX1-210ENST00000560260 RTKNQ9BST9 563 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 WWP1Q9H0M0 922 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 WASH6PQ9NQA3 447 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 RABGEF1Q9UJ41 708 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 PRAMEF33A0A0G2JMD5 474 aa21.32■■□□□ 1
SNX1-210ENST00000560260 SPAARA0A1B0GVQ0 90 aa21.32■■□□□ 1
SNX1-210ENST00000560260 KLHL33A6NCF5 533 aa21.32■■□□□ 1
SNX1-210ENST00000560260 GPC4O75487 556 aa21.32■■□□□ 1
SNX1-210ENST00000560260 CKMT1AP12532 417 aa21.32■■□□□ 1
SNX1-210ENST00000560260 ACADVLP49748 655 aa21.32■■□□□ 1
SNX1-210ENST00000560260 DUS1LQ6P1R4 473 aaKnown RBP21.32■■□□□ 1
SNX1-210ENST00000560260 ARL14Q8N4G2 192 aa21.32■■□□□ 1
SNX1-210ENST00000560260 UHMK1Q8TAS1 419 aaKnown RBP21.32■■□□□ 1
SNX1-210ENST00000560260 ATXN7L3BQ96GX2 97 aa21.32■■□□□ 1
SNX1-210ENST00000560260 PANX3Q96QZ0 392 aa21.32■■□□□ 1
SNX1-210ENST00000560260 CDC6Q99741 560 aa21.32■■□□□ 1
SNX1-210ENST00000560260 ZNF624Q9P2J8 865 aaPredicted RBP21.32■■□□□ 1
SNX1-210ENST00000560260 RNF215Q9Y6U7 377 aa21.32■■□□□ 1
SNX1-210ENST00000560260 GOLGA4Q13439 2230 aaKnown RBP21.32■■□□□ 1
SNX1-210ENST00000560260 DCDC2BA2VCK2 349 aa21.31■■□□□ 1
SNX1-210ENST00000560260 H3BMM5 538 aa21.31■■□□□ 1
SNX1-210ENST00000560260 LIN7AO14910 233 aaPredicted RBP21.31■■□□□ 1
SNX1-210ENST00000560260 CASC3O15234 703 aaKnown RBP21.31■■□□□ 1
SNX1-210ENST00000560260 FAM155BO75949 473 aa21.31■■□□□ 1
SNX1-210ENST00000560260 NOVA1P51513 510 aaKnown RBP21.31■■□□□ 1
SNX1-210ENST00000560260 CLCN7P51798 805 aa21.31■■□□□ 1
SNX1-210ENST00000560260 PGGT1BP53609 377 aa21.31■■□□□ 1
SNX1-210ENST00000560260 PMS2P54278 862 aa21.31■■□□□ 1
SNX1-210ENST00000560260 CDKN2DP55273 166 aa21.31■■□□□ 1
SNX1-210ENST00000560260 UBE2IP63279 158 aaKnown RBP21.31■■□□□ 1
SNX1-210ENST00000560260 DAB2P98082 770 aa21.31■■□□□ 1
SNX1-210ENST00000560260 TRIP6Q15654 476 aaKnown RBP21.31■■□□□ 1
SNX1-210ENST00000560260 PERM1Q5SV97 790 aa21.31■■□□□ 1
SNX1-210ENST00000560260 GLRX5Q86SX6 157 aa21.31■■□□□ 1
SNX1-210ENST00000560260 ZC3HC1Q86WB0 502 aaKnown RBP21.31■■□□□ 1
SNX1-210ENST00000560260 PPM1NQ8N819 430 aa21.31■■□□□ 1
SNX1-210ENST00000560260 CDKL2Q92772 493 aa21.31■■□□□ 1
SNX1-210ENST00000560260 INSM2Q96T92 566 aaPredicted RBP21.31■■□□□ 1
SNX1-210ENST00000560260 PARD6BQ9BYG5 372 aa21.31■■□□□ 1
SNX1-210ENST00000560260 SLC32A1Q9H598 525 aa21.31■■□□□ 1
SNX1-210ENST00000560260 ACSS3Q9H6R3 686 aa21.31■■□□□ 1
SNX1-210ENST00000560260 SARS2Q9NP81 518 aaKnown RBP21.31■■□□□ 1
SNX1-210ENST00000560260 ACSL5Q9ULC5 683 aa21.31■■□□□ 1
SNX1-210ENST00000560260 PADI4Q9UM07 663 aa21.31■■□□□ 1
SNX1-210ENST00000560260 CFAP20Q9Y6A4 193 aaKnown RBP21.31■■□□□ 1
SNX1-210ENST00000560260 PCNX2A6NKB5 2137 aa21.31■■□□□ 1
SNX1-210ENST00000560260 F8W8V4 182 aa21.3■■□□□ 1
SNX1-210ENST00000560260 RIPK2O43353 540 aa21.3■■□□□ 1
SNX1-210ENST00000560260 TNFSF14O43557 240 aa21.3■■□□□ 1
SNX1-210ENST00000560260 CKMT2P17540 419 aa21.3■■□□□ 1
SNX1-210ENST00000560260 SLC19A1P41440 591 aa21.3■■□□□ 1
SNX1-210ENST00000560260 GBX1Q14549 363 aa21.3■■□□□ 1
SNX1-210ENST00000560260 RPE65Q16518 533 aa21.3■■□□□ 1
SNX1-210ENST00000560260 SYTL3Q4VX76 610 aa21.3■■□□□ 1
SNX1-210ENST00000560260 CHCHD2P9Q5T1J5 151 aaPredicted RBP21.3■■□□□ 1
SNX1-210ENST00000560260 CAPRIN2Q6IMN6 1127 aaKnown RBP21.3■■□□□ 1
SNX1-210ENST00000560260 TRMT10CQ7L0Y3 403 aaKnown RBP21.3■■□□□ 1
SNX1-210ENST00000560260 PIM3Q86V86 326 aa21.3■■□□□ 1
SNX1-210ENST00000560260 CTAGE3PQ8IX95 158 aa21.3■■□□□ 1
SNX1-210ENST00000560260 SIDT2Q8NBJ9 832 aaKnown RBP21.3■■□□□ 1
SNX1-210ENST00000560260 MAPK15Q8TD08 544 aa21.3■■□□□ 1
SNX1-210ENST00000560260 KCNJ9Q92806 393 aa21.3■■□□□ 1
SNX1-210ENST00000560260 GPR21Q99679 349 aa21.3■■□□□ 1
SNX1-210ENST00000560260 TSSK1BQ9BXA7 367 aa21.3■■□□□ 1
SNX1-210ENST00000560260 CCDC68Q9H2F9 335 aa21.3■■□□□ 1
SNX1-210ENST00000560260 NSMCE4AQ9NXX6 385 aa21.3■■□□□ 1
SNX1-210ENST00000560260 KIR2DS5A0A0G2JLQ3 304 aa21.29■■□□□ 1
SNX1-210ENST00000560260 A0A0G2JNG1 304 aa21.29■■□□□ 1
SNX1-210ENST00000560260 EME2A4GXA9 379 aaPredicted RBP21.29■■□□□ 1
SNX1-210ENST00000560260 KIR2DS3K7RE56 304 aa21.29■■□□□ 1
SNX1-210ENST00000560260 KCNK5O95279 499 aa21.29■■□□□ 1
SNX1-210ENST00000560260 SLC35G4P0C7Q5 338 aa21.29■■□□□ 1
SNX1-210ENST00000560260 CHRM3P20309 590 aa21.29■■□□□ 1
SNX1-210ENST00000560260 ACP1P24666 158 aa21.29■■□□□ 1
SNX1-210ENST00000560260 PHBP35232 272 aa21.29■■□□□ 1
SNX1-210ENST00000560260 HSPA14Q0VDF9 509 aa21.29■■□□□ 1
SNX1-210ENST00000560260 RPA4Q13156 261 aa21.29■■□□□ 1
SNX1-210ENST00000560260 KIR2DS5Q14953 304 aa21.29■■□□□ 1
SNX1-210ENST00000560260 EFL1Q7Z2Z2 1120 aaKnown RBP21.29■■□□□ 1
SNX1-210ENST00000560260 SLC22A15Q8IZD6 547 aa21.29■■□□□ 1
SNX1-210ENST00000560260 GPATCH11Q8N954 259 aa21.29■■□□□ 1
SNX1-210ENST00000560260 CD200R1Q8TD46 325 aa21.29■■□□□ 1
SNX1-210ENST00000560260 AENQ8WTP8 325 aaKnown RBP21.29■■□□□ 1
SNX1-210ENST00000560260 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP21.29■■□□□ 12e-6■■■■■ 29
SNX1-210ENST00000560260 GLMNQ92990 594 aa21.29■■□□□ 1
SNX1-210ENST00000560260 CCDC74AQ96AQ1 378 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms