RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 SLC22A8Q8TCC7 542 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 CHURC1Q8WUH1 139 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 DNAJA4Q8WW22 397 aaPredicted RBP4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 ARHGAP45Q92619 1136 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 NT5C3BQ969T7 300 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 TMEM186Q96B77 213 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 PGM2Q96G03 612 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 ZBED3Q96IU2 234 aaPredicted RBP4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 DGAT2Q96PD7 388 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 PIP5K1AQ99755 562 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 SH3GL3Q99963 347 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 SEMA3CQ99985 751 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 MGME1Q9BQP7 344 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 SLC25A23Q9BV35 468 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 VN1R3Q9BXE9 311 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 NUSAP1Q9BXS6 441 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 KAT14Q9H8E8 782 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 SMURF2Q9HAU4 748 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 PALMDQ9NP74 551 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 PRMT8Q9NR22 394 aaPredicted RBP4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 OSGIN1Q9UJX0 560 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 SARDHQ9UL12 918 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 SNX6Q9UNH7 406 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 PTRH2Q9Y3E5 179 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 U3KQV3 271 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 ZMYM2Q9UBW7 1377 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 DCAF1Q9Y4B6 1507 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 LRRIQ3A6PVS8 624 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 CTDSP2O14595 271 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 RRP8O43159 456 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 PPP6R2O75170 966 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 GUCY1B2O75343 617 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 CLN5O75503 358 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 CBR3O75828 277 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 MFN2O95140 757 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 KLKB1P03952 638 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 OPN1LWP04000 364 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 EIF2S1P05198 315 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 URODP06132 367 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 CCDC192P0DO97 292 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 THRBP10828 461 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 RALBP11234 206 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 PSG1P11464 419 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 KRT3P12035 628 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 HGFP14210 728 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 CPA1P15085 419 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 GCFC2P16383 781 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 CDH2P19022 906 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 MCM3P25205 808 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 CAPGP40121 348 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 ME1P48163 572 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 MRPL12P52815 198 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 CDH8P55286 799 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 RPL7AP62424 266 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 SPIBQ01892 262 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 TNFRSF17Q02223 184 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 ASPHQ12797 758 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 OVGP1Q12889 678 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 ABRQ12979 859 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 LCP2Q13094 533 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 GPS2Q13227 327 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 SCGB2A2Q13296 93 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 BAATQ14032 418 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 STK38Q15208 465 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 KRT31Q15323 416 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 BCL2A1Q16548 175 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 TTI2Q6NXR4 508 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 PSRC1Q6PGN9 363 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 CES3Q6UWW8 571 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 KCTD9Q7L273 389 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 SYT13Q7L8C5 426 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 KRT28Q7Z3Y7 464 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 SYVN1Q86TM6 617 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 OR52E1Q8NGJ3 308 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 OR56A3Q8NH54 315 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 ZCCHC10Q8TBK6 192 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 BCL2L2Q92843 193 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 FBXO32Q969P5 355 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 SLAMF9Q96A28 289 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 C3orf49Q96BT1 292 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 CTHRC1Q96CG8 243 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 SLC47A1Q96FL8 570 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 PPP1R10Q96QC0 940 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 INTS14Q96SY0 518 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 SECISBP2Q96T21 854 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 PKP2Q99959 881 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 HTATIP2Q9BUP3 242 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 TBC1D10AQ9BXI6 508 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 GLIS2Q9BZE0 524 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 CHST8Q9H2A9 424 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 BICC1Q9H694 974 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 EXO5Q9H790 373 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 RMND5AQ9H871 391 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 PCDHB16Q9NRJ7 776 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 FAM212BQ9NTI7 297 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 TBC1D23Q9NUY8 699 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 TBC1D13Q9NVG8 400 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 EHD2Q9NZN4 543 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 SLC25A10Q9UBX3 287 aaPredicted RBP4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms