RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 GADD45GO95257 159 aa11.9□□□□□ -0.5
UBR4-205ENST00000417040 ASLP04424 464 aa11.9□□□□□ -0.5
UBR4-205ENST00000417040 EPHX2P34913 555 aa11.9□□□□□ -0.5
UBR4-205ENST00000417040 SSR2P43308 183 aa11.9□□□□□ -0.5
UBR4-205ENST00000417040 ELAVL2Q12926 359 aaKnown RBP11.9□□□□□ -0.5
UBR4-205ENST00000417040 VGLL4Q14135 290 aa11.9□□□□□ -0.5
UBR4-205ENST00000417040 NOMO2Q5JPE7 1267 aa11.9□□□□□ -0.5
UBR4-205ENST00000417040 FAM91A1Q658Y4 838 aa11.9□□□□□ -0.5
UBR4-205ENST00000417040 ZZZ3Q8IYH5 903 aa11.9□□□□□ -0.5
UBR4-205ENST00000417040 PHC3Q8NDX5 983 aa11.9□□□□□ -0.5
UBR4-205ENST00000417040 SIX2Q9NPC8 291 aa11.9□□□□□ -0.5
UBR4-205ENST00000417040 ZNF69Q9UC07 566 aa11.9□□□□□ -0.5
UBR4-205ENST00000417040 NOCTQ9UK39 431 aaKnown RBP11.9□□□□□ -0.5
UBR4-205ENST00000417040 TRAV19A0A0A6YYK7 116 aa11.9□□□□□ -0.51
UBR4-205ENST00000417040 KLRG2A4D1S0 409 aaPredicted RBP11.9□□□□□ -0.51
UBR4-205ENST00000417040 TULP3O75386 442 aa11.9□□□□□ -0.51
UBR4-205ENST00000417040 GABBR2O75899 941 aa11.9□□□□□ -0.51
UBR4-205ENST00000417040 ALDH3A2P51648 485 aa11.9□□□□□ -0.51
UBR4-205ENST00000417040 OAZ1P54368 228 aa11.9□□□□□ -0.51
UBR4-205ENST00000417040 MRPS6P82932 125 aaKnown RBP11.9□□□□□ -0.51
UBR4-205ENST00000417040 LAPTM4AQ15012 233 aa11.9□□□□□ -0.51
UBR4-205ENST00000417040 CATSPERGQ6ZRH7 1159 aa11.9□□□□□ -0.51
UBR4-205ENST00000417040 CERS5Q8N5B7 392 aa11.9□□□□□ -0.51
UBR4-205ENST00000417040 OR2L5Q8NG80 312 aa11.9□□□□□ -0.51
UBR4-205ENST00000417040 MTIF3Q9H2K0 278 aaKnown RBP11.9□□□□□ -0.51
UBR4-205ENST00000417040 RGS17Q9UGC6 210 aaPredicted RBP11.9□□□□□ -0.51
UBR4-205ENST00000417040 FAM86C2PA6NEL3 165 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 H3BM21 787 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 AXIN1O15169 862 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 PRKD3O94806 890 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 FGBP02675 491 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 DNTTP04053 509 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 CLUP10909 449 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 ADRA1BP35368 520 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 WSCD2Q2TBF2 565 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 NOL9Q5SY16 702 aaKnown RBP11.89□□□□□ -0.51
UBR4-205ENST00000417040 ARMC10Q8N2F6 343 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 NKX2-3Q8TAU0 364 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 HDAC2Q92769 488 aaKnown RBP11.89□□□□□ -0.51
UBR4-205ENST00000417040 MKL1Q969V6 931 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 SKA1Q96BD8 255 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 KIAA1210Q9ULL0 1709 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 NEDD8-MDP1E9PL57 170 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 ORC5O43913 435 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 COL6A2P12110 1019 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 MTA1Q13330 715 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 HOMEZQ8IX15 550 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 CPNE9Q8IYJ1 553 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 MAB21L3Q8N8X9 362 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 NKD2Q969F2 451 aaPredicted RBP11.89□□□□□ -0.51
UBR4-205ENST00000417040 TRMOQ9BU70 441 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 DNAJC11Q9NVH1 559 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 THG1LQ9NWX6 298 aaKnown RBP11.89□□□□□ -0.51
UBR4-205ENST00000417040 PCDHGC4Q9Y5F7 938 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 IRGMA1A4Y4 181 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 MAGEB17A8MXT2 336 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 SPATA31C2B4DYI2 1134 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 TLR5O60602 858 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 RBMXL2O75526 392 aaKnown RBP11.89□□□□□ -0.51
UBR4-205ENST00000417040 IFNW1P05000 195 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 NUDT6P53370 316 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 CBX2Q14781 532 aaPredicted RBP11.89□□□□□ -0.51
UBR4-205ENST00000417040 PHTF2Q8N3S3 785 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 SETD6Q8TBK2 473 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 C12orf43Q96C57 262 aaKnown RBP11.89□□□□□ -0.51
UBR4-205ENST00000417040 AP2M1Q96CW1 435 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 NSMCE3Q96MG7 304 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 TMED9Q9BVK6 235 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 SSU72Q9NP77 194 aaKnown RBP11.89□□□□□ -0.51
UBR4-205ENST00000417040 TLL2Q9Y6L7 1015 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 AURKAO14965 403 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 HCN1O60741 890 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 NME6O75414 186 aaPredicted RBP11.89□□□□□ -0.51
UBR4-205ENST00000417040 DIRAS1O95057 198 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 RAP2AP10114 183 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 PRKACGP22612 351 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 ELK4P28324 431 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 LCP2Q13094 533 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 TARDBPQ13148 414 aaKnown RBP eCLIP11.89□□□□□ -0.513e-9■■■■□ 24.6
UBR4-205ENST00000417040 MEP1AQ16819 746 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 CLEC12AQ5QGZ9 265 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 PRR23BQ6ZRT6 265 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 UFD1Q92890 307 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 TMBIM1Q969X1 311 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 ERMAPQ96PL5 475 aaPredicted RBP11.89□□□□□ -0.51
UBR4-205ENST00000417040 IDI2Q9BXS1 227 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 FKBP7Q9Y680 259 aa11.89□□□□□ -0.51
UBR4-205ENST00000417040 ZFP37Q9Y6Q3 630 aaPredicted RBP11.89□□□□□ -0.51
UBR4-205ENST00000417040 ARPC2O15144 300 aa11.88□□□□□ -0.51
UBR4-205ENST00000417040 PIGFQ07326 219 aa11.88□□□□□ -0.51
UBR4-205ENST00000417040 MYBPC3Q14896 1274 aa11.88□□□□□ -0.51
UBR4-205ENST00000417040 HERC3Q15034 1050 aa11.88□□□□□ -0.51
UBR4-205ENST00000417040 OR5K1Q8NHB7 308 aa11.88□□□□□ -0.51
UBR4-205ENST00000417040 PPP1R16AQ96I34 528 aa11.88□□□□□ -0.51
UBR4-205ENST00000417040 MUC13Q9H3R2 512 aa11.88□□□□□ -0.51
UBR4-205ENST00000417040 NEK6Q9HC98 313 aa11.88□□□□□ -0.51
UBR4-205ENST00000417040 ARHGEF4Q9NR80 690 aa11.88□□□□□ -0.51
UBR4-205ENST00000417040 HECAQ9UBI9 543 aaPredicted RBP11.88□□□□□ -0.51
UBR4-205ENST00000417040 FBXW2Q9UKT8 454 aa11.88□□□□□ -0.51
UBR4-205ENST00000417040 FZD10Q9ULW2 581 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms