RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 GREB1LQ9C091 1923 aaPredicted RBP8.95□□□□□ -0.98
LIG4-202ENST00000405925 C15orf38-AP3S2A0A0A6YYH1 394 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 K7EPI3 171 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 KERAO60938 352 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 ALDOAP04075 364 aaKnown RBP8.95□□□□□ -0.98
LIG4-202ENST00000405925 CFIP05156 583 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 PRSS56P0CW18 603 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 IDO1P14902 403 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 PPP2R1BP30154 601 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 GMPRP36959 345 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 SLC6A11P48066 632 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 CLCN4P51793 760 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 ESRRGP62508 458 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 SLC18A2Q05940 514 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 RGS1Q08116 209 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 SPIDRQ14159 915 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 ATP13A5Q4VNC0 1218 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 SAMD4BQ5PRF9 694 aaKnown RBP8.95□□□□□ -0.98
LIG4-202ENST00000405925 C1orf53Q5VUE5 145 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 ARPINQ7Z6K5 226 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 PARGQ86W56 976 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 CATSPER1Q8NEC5 780 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 TFGQ92734 400 aaPredicted RBP8.95□□□□□ -0.98
LIG4-202ENST00000405925 SMIM14Q96QK8 99 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 CCDC90BQ9GZT6 254 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 ABCG4Q9H172 646 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 ATAD3AQ9NVI7 634 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 SELENONQ9NZV5 590 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 INVSQ9Y283 1065 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 IGLON5A6NGN9 336 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 GRID2O43424 1007 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 PI15O43692 258 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 RFPL1O75677 317 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 GJB3O75712 270 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 SEC24DO94855 1032 aaPredicted RBP8.95□□□□□ -0.98
LIG4-202ENST00000405925 CDH3P22223 829 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 CCND1P24385 295 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 HOXA9P31269 272 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 TLX1P31314 330 aaPredicted RBP8.95□□□□□ -0.98
LIG4-202ENST00000405925 GDF5P43026 501 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 EIF2B5Q13144 721 aaKnown RBP8.95□□□□□ -0.98
LIG4-202ENST00000405925 SEMA3BQ13214 749 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 HNRNPA1L2Q32P51 320 aaKnown RBP8.95□□□□□ -0.98
LIG4-202ENST00000405925 ZNF648Q5T619 568 aaPredicted RBP8.95□□□□□ -0.98
LIG4-202ENST00000405925 CHSY3Q70JA7 882 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 CLNKQ7Z7G1 428 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 PHC3Q8NDX5 983 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 CDK15Q96Q40 435 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 FAIM2Q9BWQ8 316 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 GALPQ9UBC7 116 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 LEF1Q9UJU2 399 aaPredicted RBP8.95□□□□□ -0.98
LIG4-202ENST00000405925 FOCADQ5VW36 1801 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 EPN2O95208 641 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 C6P13671 934 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 ZNF37AP17032 561 aaPredicted RBP8.95□□□□□ -0.98
LIG4-202ENST00000405925 NTSP30990 170 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 GJA4P35212 333 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 KLF10Q13118 480 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 TEAD4Q15561 434 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 EMC10Q5UCC4 262 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 FAM3CQ92520 227 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 OTULINQ96BN8 352 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 C8orf33Q9H7E9 229 aaPredicted RBP8.95□□□□□ -0.98
LIG4-202ENST00000405925 OXSMQ9NWU1 459 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 WDR90Q96KV7 1748 aa8.95□□□□□ -0.98
LIG4-202ENST00000405925 RP1L1Q8IWN7 2480 aaPredicted RBP8.94□□□□□ -0.98
LIG4-202ENST00000405925 ZCWPW2A0A1B0GU75 182 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 URADA6NGE7 173 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 MAN2B1O00754 1011 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 PIP5K1BO14986 540 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 NPHS1O60500 1241 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 S1PR4O95977 384 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 UROSP10746 265 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 ZNF23P17027 643 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 BPIP17213 487 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 ITGB8P26012 769 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 IL23RQ5VWK5 629 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 FAM109BQ6ICB4 259 aaPredicted RBP8.94□□□□□ -0.98
LIG4-202ENST00000405925 PRMT9Q6P2P2 845 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 ARRDC2Q8TBH0 407 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 LMLNQ96KR4 655 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 MTERF1Q99551 399 aaKnown RBP8.94□□□□□ -0.98
LIG4-202ENST00000405925 SLC38A3Q99624 504 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 TEX12Q9BXU0 123 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 TPSD1Q9BZJ3 242 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 SRMSQ9H3Y6 488 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 NPIPB15A6NHN6 443 aaPredicted RBP8.94□□□□□ -0.98
LIG4-202ENST00000405925 TSPAN6O43657 245 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 SLC22A3O75751 556 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 CYP7B1O75881 506 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 ASGR2P07307 311 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 HPGDP15428 266 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 LEPRP48357 1165 aaKnown RBP8.94□□□□□ -0.98
LIG4-202ENST00000405925 SPINT3P49223 89 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 AP1S2P56377 157 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 HERVK_113P63132 956 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 OTUD1Q5VV17 481 aaPredicted RBP8.94□□□□□ -0.98
LIG4-202ENST00000405925 STEAP4Q687X5 459 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 MED27Q6P2C8 311 aa8.94□□□□□ -0.98
LIG4-202ENST00000405925 CRTC1Q6UUV9 634 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms