RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 NDE1Q9NXR1 346 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 CDH9Q9ULB4 789 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 KLHL20Q9Y2M5 609 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 SLC22A7Q9Y694 548 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 UMODL1Q5DID0 1318 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 SMCHD1A6NHR9 2005 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 BCLAF3A2AJT9 711 aaKnown RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 SOBPA7XYQ1 873 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 TRIM38O00635 465 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 CD3EAPO15446 510 aaKnown RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 TBC1D4O60343 1298 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 CIB2O75838 187 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 CELF2O95319 508 aaKnown RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 CBX6O95503 412 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 ITGAVP06756 1048 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 ESRRAP11474 423 aaPredicted RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 ENO3P13929 434 aaPredicted RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 TYMPP19971 482 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 ARL1P40616 181 aaPredicted RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 RTP1P59025 263 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 GHRHRQ02643 423 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 CCDC142Q17RM4 750 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 C2CD6Q53TS8 623 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 TFDP3Q5H9I0 405 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 HP1BP3Q5SSJ5 553 aaPredicted RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 LGSNQ5TDP6 509 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 OTOAQ7RTW8 1153 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 ZCCHC7Q8N3Z6 543 aaKnown RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 FAM109AQ8N4B1 249 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.51□□□□□ -1.372e-6■■■■□ 24
TM9SF4-202ENST00000398022 ASAP3Q8TDY4 903 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 ING5Q8WYH8 240 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 VWCEQ96DN2 955 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 NSL1Q96IY1 281 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 ZNF668Q96K58 619 aaPredicted RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 ZNF514Q96K75 400 aaPredicted RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 CSPG4P5Q96PW8 444 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 SLITRK1Q96PX8 696 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 SORBS1Q9BX66 1292 aaKnown RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 TSSK1BQ9BXA7 367 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 MANSC1Q9H8J5 431 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 NT5MQ9NPB1 228 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 IL26Q9NPH9 171 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 ZFP57Q9NU63 452 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 PLCXD1Q9NUJ7 323 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 FBXO28Q9NVF7 368 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 EXD2Q9NVH0 621 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 PCDHB10Q9UN67 800 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 SLC6A14Q9UN76 642 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 PCDHB9Q9Y5E1 797 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 PCDHB5Q9Y5E4 795 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 RLFQ13129 1914 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 CCDC154A6NI56 674 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 CLDN4O14493 209 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 AKR7A2O43488 359 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 BCAS1O75363 584 aaPredicted RBP6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 DIRAS3O95661 229 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 PNPP00491 289 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 CSTBP04080 98 aaKnown RBP6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 CD63P08962 238 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 TSHRP16473 764 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 CASP6P55212 293 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 CDH4P55283 916 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 ORC1Q13415 861 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 GPM6BQ13491 265 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 COL9A2Q14055 689 aaPredicted RBP6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 TSTQ16762 297 aaKnown RBP6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 RALGPS1Q5JS13 557 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 EFHC2Q5JST6 749 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 MLIPQ5VWP3 458 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 SLC9A4Q6AI14 798 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 FAM109BQ6ICB4 259 aaPredicted RBP6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 MFSD7Q6UXD7 560 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 LINC00523Q86TU6 105 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 HPS6Q86YV9 775 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 HIPK1Q86Z02 1210 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 PHTF2Q8N3S3 785 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 PYDC1Q8WXC3 89 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 FBXO32Q969P5 355 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 RFT1Q96AA3 541 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 PRMT6Q96LA8 375 aaPredicted RBP6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 TMEM120AQ9BXJ8 343 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 ADGRE3Q9BY15 652 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 NIF3L1Q9GZT8 377 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 EVA1BQ9NVM1 165 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 DNMT3LQ9UJW3 386 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 AGO1Q9UL18 857 aaKnown RBP6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 DOLKQ9UPQ8 538 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 PRELID3BQ9Y3B1 194 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 DNAJC25-GNG10A0A024R161 153 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 ILVBLA1L0T0 632 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 H7C1Q1 480 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 SPAG6O75602 509 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 PTBP3O95758 552 aaKnown RBP6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 LSM8O95777 96 aaKnown RBP6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 LGI1O95970 557 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 GNAZP19086 355 aa6.5□□□□□ -1.37
TM9SF4-202ENST00000398022 CCND2P30279 289 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms