RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 CAPN1P07384 714 aa18.82■□□□□ 0.6
RTN4-201ENST00000317610 CDKN1CP49918 316 aaPredicted RBP18.82■□□□□ 0.6
RTN4-201ENST00000317610 IST1P53990 364 aa18.82■□□□□ 0.6
RTN4-201ENST00000317610 KCNAB2Q13303 367 aa18.82■□□□□ 0.6
RTN4-201ENST00000317610 PCBP2Q15366 365 aaKnown RBP eCLIP18.82■□□□□ 0.69e-21■■□□□ 12.6
RTN4-201ENST00000317610 CYP2A13Q16696 494 aa18.82■□□□□ 0.6
RTN4-201ENST00000317610 DDR2Q16832 855 aa18.82■□□□□ 0.6
RTN4-201ENST00000317610 HABP4Q5JVS0 413 aaKnown RBP18.82■□□□□ 0.6
RTN4-201ENST00000317610 NCCRP1Q6ZVX7 275 aaPredicted RBP18.82■□□□□ 0.6
RTN4-201ENST00000317610 GLT6D1Q7Z4J2 308 aa18.82■□□□□ 0.6
RTN4-201ENST00000317610 RBM23Q86U06 439 aaKnown RBP18.82■□□□□ 0.6
RTN4-201ENST00000317610 GALNT13Q8IUC8 556 aa18.82■□□□□ 0.6
RTN4-201ENST00000317610 CHCHD4Q8N4Q1 142 aa18.82■□□□□ 0.6
RTN4-201ENST00000317610 DCBLD1Q8N8Z6 715 aa18.82■□□□□ 0.6
RTN4-201ENST00000317610 MDGA1Q8NFP4 955 aa18.82■□□□□ 0.6
RTN4-201ENST00000317610 MYEOVQ96EZ4 313 aa18.82■□□□□ 0.6
RTN4-201ENST00000317610 NSMCE3Q96MG7 304 aa18.82■□□□□ 0.6
RTN4-201ENST00000317610 LTB4R2Q9NPC1 389 aa18.82■□□□□ 0.6
RTN4-201ENST00000317610 TRNAU1APQ9NX07 287 aaKnown RBP18.82■□□□□ 0.6
RTN4-201ENST00000317610 PCNTO95613 3336 aa18.81■□□□□ 0.6
RTN4-201ENST00000317610 DFNA5O60443 496 aa18.81■□□□□ 0.6
RTN4-201ENST00000317610 UGT2B11O75310 529 aa18.81■□□□□ 0.6
RTN4-201ENST00000317610 TBX18O95935 607 aa18.81■□□□□ 0.6
RTN4-201ENST00000317610 CST1P01037 141 aa18.81■□□□□ 0.6
RTN4-201ENST00000317610 RPS3AP61247 264 aaKnown RBP18.81■□□□□ 0.6
RTN4-201ENST00000317610 ISL1P61371 349 aa18.81■□□□□ 0.6
RTN4-201ENST00000317610 CTF1Q16619 201 aa18.81■□□□□ 0.6
RTN4-201ENST00000317610 IL27RAQ6UWB1 636 aa18.81■□□□□ 0.6
RTN4-201ENST00000317610 METTL6Q8TCB7 284 aa18.81■□□□□ 0.6
RTN4-201ENST00000317610 FBLIM1Q8WUP2 373 aa18.81■□□□□ 0.6
RTN4-201ENST00000317610 FIG4Q92562 907 aa18.81■□□□□ 0.6
RTN4-201ENST00000317610 SLC47A1Q96FL8 570 aa18.81■□□□□ 0.6
RTN4-201ENST00000317610 FUBP3Q96I24 572 aaKnown RBP eCLIP18.81■□□□□ 0.62e-9■■■□□ 14.6
RTN4-201ENST00000317610 BCL7BQ9BQE9 202 aa18.81■□□□□ 0.6
RTN4-201ENST00000317610 C17orf80Q9BSJ5 609 aa18.81■□□□□ 0.6
RTN4-201ENST00000317610 BAG5Q9UL15 447 aa18.81■□□□□ 0.6
RTN4-201ENST00000317610 CPQQ9Y646 472 aa18.81■□□□□ 0.6
RTN4-201ENST00000317610 GREB1Q4ZG55 1949 aa18.81■□□□□ 0.6
RTN4-201ENST00000317610 A0A0U1RQF3 1178 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 MAGEA10P43363 369 aaPredicted RBP18.8■□□□□ 0.6
RTN4-201ENST00000317610 CLCN4P51793 760 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 TPD52P55327 224 aaPredicted RBP18.8■□□□□ 0.6
RTN4-201ENST00000317610 DSC3Q14574 896 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 PIANPQ8IYJ0 282 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 FBXO30Q8TB52 745 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 KCNJ9Q92806 393 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 ALPK1Q96QP1 1244 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 AKIP1Q9NQ31 210 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 WARS2Q9UGM6 360 aaKnown RBP18.8■□□□□ 0.6
RTN4-201ENST00000317610 ADGRE2Q9UHX3 823 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 SH3BP1Q9Y3L3 701 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 POLR3HQ9Y535 204 aaPredicted RBP18.8■□□□□ 0.6
RTN4-201ENST00000317610 PCDHGB1Q9Y5G3 927 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 SLC1A7O00341 560 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 OR7A17O14581 309 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 NOBOXO60393 691 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 HOXD9P28356 352 aaPredicted RBP18.8■□□□□ 0.6
RTN4-201ENST00000317610 TTPAP49638 278 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 GP2P55259 537 aaKnown RBP18.8■□□□□ 0.6
RTN4-201ENST00000317610 TRIM32Q13049 653 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 NR6A1Q15406 480 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 AP5B1Q2VPB7 878 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 ZNF691Q5VV52 312 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 PSAPL1Q6NUJ1 521 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 TMCO5AQ8N6Q1 288 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 NUDT8Q8WV74 236 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 SLC13A3Q8WWT9 602 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 ZNF566Q969W8 418 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 VMP1Q96GC9 406 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 CCDC138Q96M89 665 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 WDR12Q9GZL7 423 aaKnown RBP18.8■□□□□ 0.6
RTN4-201ENST00000317610 ACTR8Q9H981 624 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.8■□□□□ 0.6
RTN4-201ENST00000317610 CCL27Q9Y4X3 112 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 SNX5Q9Y5X3 404 aa18.8■□□□□ 0.6
RTN4-201ENST00000317610 C2orf81A6NN90 581 aa18.79■□□□□ 0.6
RTN4-201ENST00000317610 GSTA4O15217 222 aa18.79■□□□□ 0.6
RTN4-201ENST00000317610 OR1I1O60431 355 aa18.79■□□□□ 0.6
RTN4-201ENST00000317610 SCELO95171 688 aa18.79■□□□□ 0.6
RTN4-201ENST00000317610 AGXTP21549 392 aa18.79■□□□□ 0.6
RTN4-201ENST00000317610 RYKP34925 604 aa18.79■□□□□ 0.6
RTN4-201ENST00000317610 CYP4F3Q08477 520 aa18.79■□□□□ 0.6
RTN4-201ENST00000317610 IL18R1Q13478 541 aa18.79■□□□□ 0.6
RTN4-201ENST00000317610 AAK1Q2M2I8 961 aa18.79■□□□□ 0.6
RTN4-201ENST00000317610 RFTN2Q52LD8 501 aaPredicted RBP18.79■□□□□ 0.6
RTN4-201ENST00000317610 NADSYN1Q6IA69 706 aa18.79■□□□□ 0.6
RTN4-201ENST00000317610 GDF6Q6KF10 455 aaPredicted RBP18.79■□□□□ 0.6
RTN4-201ENST00000317610 FRA10AC1Q70Z53 315 aa18.79■□□□□ 0.6
RTN4-201ENST00000317610 GOLGA7Q7Z5G4 137 aa18.79■□□□□ 0.6
RTN4-201ENST00000317610 HS3ST5Q8IZT8 346 aa18.79■□□□□ 0.6
RTN4-201ENST00000317610 PIK3C3Q8NEB9 887 aa18.79■□□□□ 0.6
RTN4-201ENST00000317610 OR5K1Q8NHB7 308 aa18.79■□□□□ 0.6
RTN4-201ENST00000317610 GIPC2Q8TF65 315 aa18.79■□□□□ 0.6
RTN4-201ENST00000317610 GTF2H4Q92759 462 aa18.79■□□□□ 0.6
RTN4-201ENST00000317610 RHBDF1Q96CC6 855 aa18.79■□□□□ 0.6
RTN4-201ENST00000317610 ZNF641Q96N77 438 aaPredicted RBP18.79■□□□□ 0.6
RTN4-201ENST00000317610 PSKH2Q96QS6 385 aa18.79■□□□□ 0.6
RTN4-201ENST00000317610 NODALQ96S42 347 aa18.79■□□□□ 0.6
RTN4-201ENST00000317610 OLA1Q9NTK5 396 aaKnown RBP18.79■□□□□ 0.6
RTN4-201ENST00000317610 PAK1IP1Q9NWT1 392 aaPredicted RBP18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms