RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 PMS2P1A4D2B8 440 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 SDR42E2A6NKP2 422 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 PDZK1P1A8MUH7 402 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 TMX2-CTNND1H3BSU7 103 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 CCDC188H7C350 402 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 DNALI1O14645 258 aaPredicted RBP12.71□□□□□ -0.37
VPS28-216ENST00000533806 ZW10O43264 779 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 OR1I1O60431 355 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 MPOP05164 745 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 GSTM1P09488 218 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 INHBCP55103 352 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 PRAMEP78395 509 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 GSTM4Q03013 218 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 PPP1R7Q15435 360 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 SEPT7Q16181 437 aaKnown RBP12.71□□□□□ -0.37
VPS28-216ENST00000533806 AMZ1Q400G9 498 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 WDR74Q6RFH5 385 aaPredicted RBP12.71□□□□□ -0.37
VPS28-216ENST00000533806 CES3Q6UWW8 571 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 SYT10Q6XYQ8 523 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 TMEM26Q6ZUK4 368 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 PIM3Q86V86 326 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 PROSER1Q86XN7 944 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 JAMLQ86YT9 394 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 RBM12BQ8IXT5 1001 aaKnown RBP12.71□□□□□ -0.37
VPS28-216ENST00000533806 OR4D9Q8NGE8 314 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 OR6P1Q8NGX9 317 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 HM13Q8TCT9 377 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 RUNDC3BQ96NL0 473 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 TMEM74Q96NL1 305 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 FCRL3Q96P31 734 aaPredicted RBP12.71□□□□□ -0.37
VPS28-216ENST00000533806 INSM2Q96T92 566 aaPredicted RBP12.71□□□□□ -0.37
VPS28-216ENST00000533806 SLC38A3Q99624 504 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 TRIM56Q9BRZ2 755 aaKnown RBP12.71□□□□□ -0.37
VPS28-216ENST00000533806 CCM2Q9BSQ5 444 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.71□□□□□ -0.37
VPS28-216ENST00000533806 OR52A5Q9H2C5 316 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 ASCL3Q9NQ33 180 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 PSMD13Q9UNM6 376 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 CFAP47Q6ZTR5 3102 aa12.71□□□□□ -0.37
VPS28-216ENST00000533806 PKD1L2Q7Z442 2459 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 CCDC187A0A096LP49 1063 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 ZCWPW2A0A1B0GU75 182 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 FAM237BA0A1B0GVD1 139 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 GOLGA8MH3BSY2 632 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 CD3EAPO15446 510 aaKnown RBP12.7□□□□□ -0.38
VPS28-216ENST00000533806 VIPP01282 170 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 CASQ1P31415 396 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 PAFAH1B1P43034 410 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 LIMK2P53671 638 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 DR1Q01658 176 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 RPA4Q13156 261 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 CBLBQ13191 982 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 GPR18Q14330 331 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 ANKRD20A4Q4UJ75 823 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 FASTKD1Q53R41 847 aaKnown RBP12.7□□□□□ -0.38
VPS28-216ENST00000533806 KIAA0930Q6ICG6 404 aaPredicted RBP12.7□□□□□ -0.38
VPS28-216ENST00000533806 HOOK3Q86VS8 718 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 KLHL7Q8IXQ5 586 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 CFAP206Q8IYR0 622 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 SPATA4Q8NEY3 305 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 SPDYE1Q8NFV5 336 aaPredicted RBP12.7□□□□□ -0.38
VPS28-216ENST00000533806 GPR150Q8NGU9 434 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 WDR36Q8NI36 951 aaKnown RBP12.7□□□□□ -0.38
VPS28-216ENST00000533806 ZCCHC14Q8WYQ9 949 aaKnown RBP12.7□□□□□ -0.38
VPS28-216ENST00000533806 SLC46A1Q96NT5 459 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 DPYSL5Q9BPU6 564 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 TBC1D10AQ9BXI6 508 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 WWP1Q9H0M0 922 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 P2RY12Q9H244 342 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 EPB41L1Q9H4G0 881 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 STN1Q9H668 368 aaKnown RBP12.7□□□□□ -0.38
VPS28-216ENST00000533806 SYNDIG1Q9H7V2 258 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 CATSPERZQ9NTU4 200 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 TMEM9Q9P0T7 183 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 ZMIZ1Q9ULJ6 1067 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 SATB2Q9UPW6 733 aa12.7□□□□□ -0.38
VPS28-216ENST00000533806 ZFC3H1O60293 1989 aaKnown RBP12.69□□□□□ -0.38
VPS28-216ENST00000533806 SLC5A10A0PJK1 596 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 QSOX1O00391 747 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 TTI1O43156 1089 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 BRINP1O60477 761 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 VAPBO95292 243 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 THRAP10827 490 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 MTHFD1P11586 935 aaKnown RBP12.69□□□□□ -0.38
VPS28-216ENST00000533806 PDHA2P29803 388 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 PBLDP30039 288 aaPredicted RBP12.69□□□□□ -0.38
VPS28-216ENST00000533806 HALP42357 657 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 GABREP78334 506 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 EIF3IQ13347 325 aaKnown RBP12.69□□□□□ -0.38
VPS28-216ENST00000533806 BIRC2Q13490 618 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 TRA2AQ13595 282 aaKnown RBP eCLIP12.69□□□□□ -0.38
VPS28-216ENST00000533806 DHX34Q14147 1143 aaKnown RBP12.69□□□□□ -0.38
VPS28-216ENST00000533806 C16orf72Q14CZ0 275 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 ST3GAL2Q16842 350 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 TYSND1Q2T9J0 566 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 AARS2Q5JTZ9 985 aaKnown RBP12.69□□□□□ -0.38
VPS28-216ENST00000533806 HIBCHQ6NVY1 386 aaPredicted RBP12.69□□□□□ -0.38
VPS28-216ENST00000533806 TMEM71Q6P5X7 295 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 ZNF572Q7Z3I7 529 aaPredicted RBP12.69□□□□□ -0.38
VPS28-216ENST00000533806 PCGF5Q86SE9 256 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms