RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 RIMKLAQ8IXN7 391 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 RBM12BQ8IXT5 1001 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 COLGALT2Q8IYK4 626 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 ITCHQ96J02 903 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 BRINP2Q9C0B6 783 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 AASSQ9UDR5 926 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 C2orf81A6NN90 581 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 CST1P01037 141 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 PIGAP37287 484 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 TRIP4Q15650 581 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 MOGQ16653 247 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 PDCD4Q53EL6 469 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 EGFLAMQ63HQ2 1017 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 C8orf59Q8N0T1 100 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 CLHC1Q8NHS4 586 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 GIPC2Q8TF65 315 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 SDCCAG3Q96C92 435 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 ZNF583Q96ND8 569 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 NUSAP1Q9BXS6 441 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 MUC13Q9H3R2 512 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 IKZF5Q9H5V7 419 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 PFDN4Q9NQP4 134 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 NLE1Q9NVX2 485 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 ZIM2Q9NZV7 527 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 ADGRE2Q9UHX3 823 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 MAGEL2Q9UJ55 1249 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 GOLGA8CPA6NN73 597 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 G3V2T6 193 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 STX7O15400 261 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 INHBBP09529 407 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 TACR2P21452 398 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 ZNF140P52738 457 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 YBEYP58557 167 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 LSM3P62310 102 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 HMGCS1Q01581 520 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 IL1RL1Q01638 556 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 GRIK2Q13002 908 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 GTDC1Q4AE62 458 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 XAF1Q6GPH4 301 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 AFTPHQ6ULP2 937 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 PHACTR4Q8IZ21 702 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 SPARTQ8N0X7 666 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 OR2T12Q8NG77 320 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 OR4F6Q8NGB9 312 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 NRBF2Q96F24 287 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 CINPQ9BW66 212 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 SLC45A1Q9Y2W3 748 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 PCDHB3Q9Y5E6 796 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 FUOMA2VDF0 154 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 CBX4O00257 560 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 CBFA2T3O75081 653 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 PRKD3O94806 890 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 PRLP01236 227 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 RAP2AP10114 183 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 HSPA7P48741 367 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 PLA2G16P53816 162 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 RPL38P63173 70 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 RELAQ04206 551 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 KCNAB2Q13303 367 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 ABRAXAS2Q15018 415 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 LINGO4Q6UY18 593 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 FRA10AC1Q70Z53 315 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 EFL1Q7Z2Z2 1120 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 MILR1Q7Z6M3 343 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 SERINC5Q86VE9 423 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 PDPRQ8NCN5 879 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 CD200R1Q8TD46 325 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 CCDC97Q96F63 343 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 AMBRA1Q9C0C7 1298 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 C8orf4Q9NR00 106 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 COMMD8Q9NX08 183 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 ZNF639Q9UID6 485 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 PSME2Q9UL46 239 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 H0YAE9 185 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 STX16O14662 325 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 HS6ST1O60243 411 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 E2F6O75461 281 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 TYMPP19971 482 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 CRHBPP24387 322 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 HOXD9P28356 352 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 LAPTM4AQ15012 233 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 NFE2Q16621 373 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 CYP2A13Q16696 494 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 BTLAQ7Z6A9 289 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 SNX29P2Q8IUI4 249 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 FRS2Q8WU20 508 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 NCLNQ969V3 563 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 ISG20Q96AZ6 181 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 AURKBQ96GD4 344 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 TRIB3Q96RU7 358 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 HPS4Q9NQG7 708 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 TBCCD1Q9NVR7 557 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 PCDHB8Q9UN66 801 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 PCDHB5Q9Y5E4 795 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 PDE4DIPQ5VU43 2346 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 MIA3Q5JRA6 1907 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 DRGXA6NNA5 263 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 TLR5O60602 858 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms