RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 ESR1P03372 595 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 ATXN1LP0C7T5 689 aaKnown RBP6.04□□□□□ -1.44
HERC4-209ENST00000473533 JUNDP17535 347 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 PSMA3P25788 255 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 HOXD12P35452 270 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 ARL1P40616 181 aaPredicted RBP6.04□□□□□ -1.44
HERC4-209ENST00000473533 OR4D2P58180 307 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 PPP2R2BQ00005 443 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 DSC2Q02487 901 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 CYP4F3Q08477 520 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 FADDQ13158 208 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 ZIK1Q3SY52 487 aaPredicted RBP6.04□□□□□ -1.44
HERC4-209ENST00000473533 GJC2Q5T442 439 aaPredicted RBP6.04□□□□□ -1.44
HERC4-209ENST00000473533 OVOS1Q6IE37 1185 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 ZNF280DQ6N043 979 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 ERICH5Q6P6B1 374 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 CYP20A1Q6UW02 462 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 SYVN1Q86TM6 617 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 MICU2Q8IYU8 434 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 METTL6Q8TCB7 284 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 KCNJ9Q92806 393 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 GLMNQ92990 594 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 HMCESQ96FZ2 354 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 REXO5Q96IC2 774 aaKnown RBP6.04□□□□□ -1.44
HERC4-209ENST00000473533 LRCH3Q96II8 777 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 NSMCE3Q96MG7 304 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 CDK5RAP1Q96SZ6 601 aaKnown RBP6.04□□□□□ -1.44
HERC4-209ENST00000473533 THUMPD3Q9BV44 507 aaKnown RBP6.04□□□□□ -1.44
HERC4-209ENST00000473533 DPY30Q9C005 99 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 CXCL16Q9H2A7 254 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 MMP27Q9H306 513 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 KAT8Q9H7Z6 458 aaKnown RBP6.04□□□□□ -1.44
HERC4-209ENST00000473533 ANKMY1Q9P2S6 941 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 RPS6KA6Q9UK32 745 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 MAPRE3Q9UPY8 281 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 SCML2Q9UQR0 700 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 UGT2A1Q9Y4X1 527 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 ANGPTL3Q9Y5C1 460 aa6.04□□□□□ -1.44
HERC4-209ENST00000473533 ZNF638Q14966 1978 aaKnown RBP6.04□□□□□ -1.44
HERC4-209ENST00000473533 MN1Q10571 1320 aaPredicted RBP6.04□□□□□ -1.44
HERC4-209ENST00000473533 PLXNB2O15031 1838 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 IGLV3-10A0A075B6K4 115 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 CLDN24A6NM45 220 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 J3QRK9 145 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 CXCR6O00574 342 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 AQP9O43315 295 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 PEX10O60683 326 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 NADKO95544 446 aaPredicted RBP6.03□□□□□ -1.44
HERC4-209ENST00000473533 CLIC3O95833 236 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 SNAI1O95863 264 aaPredicted RBP6.03□□□□□ -1.44
HERC4-209ENST00000473533 TFPTP0C1Z6 253 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 SHMT2P34897 504 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 HPCAL1P37235 193 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 ETFBP38117 255 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 OPRL1P41146 370 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 PPP5CP53041 499 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 ABRQ12979 859 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 KCNAB2Q13303 367 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 SEMA3AQ14563 771 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 TRIP4Q15650 581 aaPredicted RBP6.03□□□□□ -1.44
HERC4-209ENST00000473533 ALG1LQ6GMV1 187 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 RPS27LQ71UM5 84 aaKnown RBP6.03□□□□□ -1.44
HERC4-209ENST00000473533 PIM3Q86V86 326 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 DTWD1Q8N5C7 304 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 PROKR1Q8TCW9 393 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 FIG4Q92562 907 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 NCLNQ969V3 563 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 FUBP1Q96AE4 644 aaKnown RBP6.03□□□□□ -1.44
HERC4-209ENST00000473533 FBXL8Q96CD0 374 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 CDKN2AIPNLQ96HQ2 116 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 SEMA3CQ99985 751 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 ADGRE3Q9BY15 652 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 NAA50Q9GZZ1 169 aaKnown RBP6.03□□□□□ -1.44
HERC4-209ENST00000473533 NTN4Q9HB63 628 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 MARCH4Q9P2E8 410 aaPredicted RBP6.03□□□□□ -1.44
HERC4-209ENST00000473533 DOLKQ9UPQ8 538 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 FAM92AA1XBS5 289 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 M0QZQ0 153 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 RGS10O43665 173 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 SEC24AO95486 1093 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 PEX11BO96011 259 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 APOA1P02647 267 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 CD247P20963 164 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 LPOP22079 712 aaPredicted RBP6.03□□□□□ -1.44
HERC4-209ENST00000473533 UGT2B10P36537 528 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 PTGER3P43115 390 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 GJA8P48165 433 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 KCNC1P48547 511 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 NRIP1P48552 1158 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 ARSDP51689 593 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 PGGT1BP53609 377 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 FOXA1P55317 472 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 MRPS6P82932 125 aaKnown RBP6.03□□□□□ -1.44
HERC4-209ENST00000473533 IL5RAQ01344 420 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 TSNQ15631 228 aaKnown RBP6.03□□□□□ -1.44
HERC4-209ENST00000473533 BCL2A1Q16548 175 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 TMEM53Q6P2H8 277 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 SHQ1Q6PI26 577 aaKnown RBP6.03□□□□□ -1.44
HERC4-209ENST00000473533 PAQR3Q6TCH7 311 aa6.03□□□□□ -1.44
HERC4-209ENST00000473533 SPESP1Q6UW49 350 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms