RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ZNF638Q14966 1978 aaKnown RBP6.49□□□□□ -1.37
USP40-202ENST00000409945 NUP210Q8TEM1 1887 aaPredicted RBP6.49□□□□□ -1.37
USP40-202ENST00000409945 PSMD9O00233 223 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 CLDN5O00501 218 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 MED7O43513 233 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 HCRTO43612 131 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 PDGFBP01127 241 aaPredicted RBP6.48□□□□□ -1.37
USP40-202ENST00000409945 MBL2P11226 248 aaPredicted RBP6.48□□□□□ -1.37
USP40-202ENST00000409945 VDRP11473 427 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 CCDC130P13994 396 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 TGM1P22735 817 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 MSNP26038 577 aaKnown RBP6.48□□□□□ -1.37
USP40-202ENST00000409945 CXCR5P32302 372 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 SNX16P57768 344 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 CYP4F2P78329 520 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 SIM1P81133 766 aaPredicted RBP6.48□□□□□ -1.37
USP40-202ENST00000409945 GCNT1Q02742 428 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 LRMPQ12912 555 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 MTF1Q14872 753 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 CBWD6Q4V339 395 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 CBWD3Q5JTY5 395 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 CBWD5Q5RIA9 395 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 STXBP5Q5T5C0 1151 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 KIRREL2Q6UWL6 708 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 USP51Q70EK9 711 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 CCDC105Q8IYK2 499 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 ARL14EPQ8N8R7 260 aaPredicted RBP6.48□□□□□ -1.37
USP40-202ENST00000409945 WDR60Q8WVS4 1066 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 CNOT6LQ96LI5 555 aaKnown RBP6.48□□□□□ -1.37
USP40-202ENST00000409945 DUSP16Q9BY84 665 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 PLA2G2FQ9BZM2 168 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 LRRC4Q9HBW1 653 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 LTB4R2Q9NPC1 389 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 RRAGDQ9NQL2 400 aaPredicted RBP6.48□□□□□ -1.37
USP40-202ENST00000409945 GKN1Q9NS71 199 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 ANO10Q9NW15 660 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 DUS2Q9NX74 493 aaKnown RBP6.48□□□□□ -1.37
USP40-202ENST00000409945 GCNT4Q9P109 453 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 PDP2Q9P2J9 529 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 ADAM21Q9UKJ8 722 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 NDRG2Q9UN36 371 aaKnown RBP6.48□□□□□ -1.37
USP40-202ENST00000409945 ARHGAP26Q9UNA1 814 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 DNAJC16Q9Y2G8 782 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 NOTCH4Q99466 2003 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 ZNF840PA6NDX5 716 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 MATN3O15232 486 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 ATG13O75143 517 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 PAEPP09466 180 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 ATP1A3P13637 1013 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 KRT5P13647 590 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 ATP5C1P36542 298 aaKnown RBP6.48□□□□□ -1.37
USP40-202ENST00000409945 RPS9P46781 194 aaKnown RBP6.48□□□□□ -1.37
USP40-202ENST00000409945 VCPP55072 806 aaKnown RBP6.48□□□□□ -1.37
USP40-202ENST00000409945 GRSF1Q12849 480 aaKnown RBP eCLIP6.48□□□□□ -1.37
USP40-202ENST00000409945 RUNX3Q13761 415 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 EXOC3L4Q17RC7 722 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 TMEM270Q6UE05 265 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 SIX6OS1Q8N1H7 587 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 C12orf29Q8N999 325 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 OR6Y1Q8NGX8 325 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 USP13Q92995 863 aaPredicted RBP6.48□□□□□ -1.37
USP40-202ENST00000409945 OTUB2Q96DC9 234 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 TWNKQ96RR1 684 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 KCNK16Q96T55 309 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 THAP7Q9BT49 309 aaPredicted RBP6.48□□□□□ -1.37
USP40-202ENST00000409945 TRIM62Q9BVG3 475 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 UBXN6Q9BZV1 441 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 SDCBP2Q9H190 292 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 APOBEC3GQ9HC16 384 aaKnown RBP6.48□□□□□ -1.37
USP40-202ENST00000409945 CSNK1G1Q9HCP0 422 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 KCNK9Q9NPC2 374 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 ASIC5Q9NY37 505 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 AMFRQ9UKV5 643 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 SH2B3Q9UQQ2 575 aa6.48□□□□□ -1.37
USP40-202ENST00000409945 A0A1B0GVC2 190 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 GTPBP10A4D1E9 387 aaKnown RBP6.47□□□□□ -1.37
USP40-202ENST00000409945 C16orf96A6NNT2 1141 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 SPECC1L-ADORA2AF8WAN1 911 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 PRAMEF12O95522 483 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 DCNP07585 359 aaKnown RBP6.47□□□□□ -1.37
USP40-202ENST00000409945 CSF1P09603 554 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 LYL1P12980 280 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 CD53P19397 219 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 GRIA3P42263 894 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 TPTEP56180 551 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 SLC7A9P82251 487 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 BST2Q10589 180 aaKnown RBP6.47□□□□□ -1.37
USP40-202ENST00000409945 E2F5Q15329 346 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 STX1AQ16623 288 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 FBXO43Q4G163 708 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 ARHGAP17Q68EM7 881 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 NAPRTQ6XQN6 538 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 CLEC20AQ6ZU45 233 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 PARS2Q7L3T8 475 aaKnown RBP6.47□□□□□ -1.37
USP40-202ENST00000409945 RSRC2Q7L4I2 434 aaKnown RBP6.47□□□□□ -1.37
USP40-202ENST00000409945 SIRT6Q8N6T7 355 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 TMEM105Q8N8V8 129 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 ANKRD52Q8NB46 1076 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 RNF139Q8WU17 664 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 SEMA4DQ92854 862 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms