RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 SLCO1B7G3V0H7 640 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC27A2O14975 620 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 SEPT4O43236 478 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 CPB1P15086 417 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 PPP5CP53041 499 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 PKNOX1P55347 436 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 COL19A1Q14993 1142 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 FBXO43Q4G163 708 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 NKAPLQ5M9Q1 402 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 BRINP3Q76B58 766 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 GPR149Q86SP6 731 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 NAGSQ8N159 534 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 OR6C4Q8NGE1 309 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 OR10T2Q8NGX3 314 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 TRIB2Q92519 343 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 PIWIL1Q96J94 861 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 CNTNAP3BQ96NU0 1288 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 MTERF1Q99551 399 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 PCED1AQ9H1Q7 454 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 DVL1O14640 695 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 TBX1O43435 398 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 NSA2O95478 260 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 CRYABP02511 175 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 CYBBP04839 570 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 MATN1P21941 496 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 SDC4P31431 198 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 SPRP35270 261 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 RPL5P46777 297 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 DVL1P1P54792 670 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 TGM3Q08188 693 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 ZNF684Q5T5D7 378 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 USP53Q70EK8 1073 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 ARCQ7LC44 396 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 CD163Q86VB7 1156 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 TMEM132CQ8N3T6 1108 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 ACTRT2Q8TDY3 377 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 NANOS1Q8WY41 292 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 RBM14Q96PK6 669 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 ZSCAN10Q96SZ4 725 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 HINT2Q9BX68 163 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 DDX4Q9NQI0 724 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 NECTIN3Q9NQS3 549 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 C14orf105Q9NVL8 296 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 PADI1Q9ULC6 663 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 NAALADL1Q9UQQ1 740 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 EMILIN1Q9Y6C2 1016 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 DNMT1P26358 1616 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 MED23Q9ULK4 1368 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 SHROOM2Q13796 1616 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 WASH4PA8MWX3 477 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 CLIC1O00299 241 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 NME6O75414 186 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 BEST1O76090 585 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 UCHL1P09936 223 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 CCNYL3P0C7X3 344 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 ADH7P40394 386 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 ALDH1A3P47895 512 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 CCNHP51946 323 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 OGDHQ02218 1023 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 SMARCB1Q12824 385 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 DLGAP5Q15398 846 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 TBC1D25Q3MII6 688 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 SWT1Q5T5J6 900 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 ELP2Q6IA86 826 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 ADGRD2Q7Z7M1 963 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 CUZD1Q86UP6 607 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 ZFAND2BQ8WV99 257 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 RAB9BQ9NP90 201 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 TEX10Q9NXF1 929 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 ADAMTS1Q9UHI8 967 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 ZMYM5Q9UJ78 669 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 CAMSAP2Q08AD1 1489 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 DNPH1O43598 174 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 TCF21O43680 179 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 CSH1P0DML2 217 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 CSH2P0DML3 217 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 CHATP28329 748 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 EPHB2P29323 1055 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 MRPS10P82664 201 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 SMAD3P84022 425 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 ILF2Q12905 390 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 KLRB1Q12918 225 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 MFSD10Q14728 455 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 HEPACAMQ14CZ8 416 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 ZBED5Q49AG3 693 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 LRRC47Q8N1G4 583 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 ZNF516Q92618 1163 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 BRINP2Q9C0B6 783 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 SPAG4Q9NPE6 437 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 KBTBD4Q9NVX7 518 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 AMACRQ9UHK6 382 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 IRGMA1A4Y4 181 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 ZNF217O75362 1048 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 TM7SF2O76062 418 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 FSBPO95073 299 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 ELFN1P0C7U0 828 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 ALDH7A1P49419 539 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 ZNF789Q5FWF6 425 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 PHYHD1Q5SRE7 291 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 STEAP3Q658P3 488 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms