RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 CDH8P55286 799 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 KRTAP10-6P60371 365 aaPredicted RBP3.85□□□□□ -1.79
CD44-219ENST00000525685 ZBED6P86452 979 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 ACSM2AQ08AH3 577 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 CDC16Q13042 620 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 MYBPHQ13203 477 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 EFNB3Q15768 340 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 IZUMO4Q1ZYL8 232 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 ATP13A5Q4VNC0 1218 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 HSP90AB3PQ58FF7 597 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 SUSD4Q5VX71 490 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 ACSM2BQ68CK6 577 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 ANKRD54Q6NXT1 300 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 MZT2BQ6NZ67 158 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 RHBDF2Q6PJF5 856 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 DLK2Q6UY11 383 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 GLDNQ6ZMI3 551 aaPredicted RBP3.85□□□□□ -1.79
CD44-219ENST00000525685 CCNI2Q6ZMN8 369 aaPredicted RBP3.85□□□□□ -1.79
CD44-219ENST00000525685 C18orf65Q6ZTR6 163 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 NBPF5PQ86XG9 351 aaPredicted RBP3.85□□□□□ -1.79
CD44-219ENST00000525685 SPATA2LQ8IUW3 424 aaPredicted RBP3.85□□□□□ -1.79
CD44-219ENST00000525685 CLIP4Q8N3C7 705 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 C17orf53Q8N3J3 647 aaPredicted RBP3.85□□□□□ -1.79
CD44-219ENST00000525685 WDTC1Q8N5D0 677 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 CNBD1Q8NA66 436 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 OR8K5Q8NH50 307 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 NUDCD2Q8WVJ2 157 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 NUDCD1Q96RS6 583 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 FIZ1Q96SL8 496 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 ACOX2Q99424 681 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 HAUS8Q9BT25 410 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 ESRP2Q9H6T0 727 aaKnown RBP3.85□□□□□ -1.79
CD44-219ENST00000525685 HYPKQ9NX55 129 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 CWC15Q9P013 229 aaKnown RBP3.85□□□□□ -1.79
CD44-219ENST00000525685 ABI3Q9P2A4 366 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 OR14J1Q9UGF5 321 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 LOXL2Q9Y4K0 774 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 ARFGEF1Q9Y6D6 1849 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 CACNA1FO60840 1977 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 COL4A1P02462 1669 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 LRRC37AA6NMS7 1700 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 IGLV5-52A0A0A0MRZ9 124 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 A6NCN8 305 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 BTBD18B2RXH4 712 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 VILLO15195 856 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 SPINT2O43291 252 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 DOK2O60496 412 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 PTP4A3O75365 173 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 GAGE7O76087 117 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 RB1P06400 928 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 GAGE12FP0CL80 117 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 GAGE12GP0CL81 117 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 GAGE12IP0CL82 117 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 IGHV4-30-4P0DP06 118 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 SRCP12931 536 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 MAOAP21397 527 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 MAPK4P31152 587 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 GNL1P36915 607 aaPredicted RBP3.84□□□□□ -1.79
CD44-219ENST00000525685 SNX16P57768 344 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 DSCR9P59020 149 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 PDE1BQ01064 536 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 GAGE1Q13065 139 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 GAGE4Q13068 117 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 IKQ13123 557 aaPredicted RBP3.84□□□□□ -1.79
CD44-219ENST00000525685 SF3B4Q15427 424 aaKnown RBP eCLIP3.84□□□□□ -1.79
CD44-219ENST00000525685 ADIPOQQ15848 244 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 PNLIPRP3Q17RR3 467 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 PARP10Q53GL7 1025 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 KCNT1Q5JUK3 1230 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 DCST1Q5T197 706 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 FAM122CQ6P4D5 195 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 DPPA4Q7L190 304 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 CHST9Q7L1S5 443 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 TAGAPQ8N103 731 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 SPATA3Q8NHX4 192 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 IGSF8Q969P0 613 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 SAT2Q96F10 170 aaPredicted RBP3.84□□□□□ -1.79
CD44-219ENST00000525685 CALML4Q96GE6 196 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 MTERF1Q99551 399 aaKnown RBP3.84□□□□□ -1.79
CD44-219ENST00000525685 MEIS3Q99687 375 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 CMKLR1Q99788 373 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 TREX2Q9BQ50 279 aaPredicted RBP3.84□□□□□ -1.79
CD44-219ENST00000525685 ACSS1Q9NUB1 689 aaPredicted RBP3.84□□□□□ -1.79
CD44-219ENST00000525685 VPS28Q9UK41 221 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 RNF123Q5XPI4 1314 aa3.84□□□□□ -1.79
CD44-219ENST00000525685 IGLV5-37A0A075B6J1 123 aa3.83□□□□□ -1.8
CD44-219ENST00000525685 A0A0G2JLW4 131 aa3.83□□□□□ -1.8
CD44-219ENST00000525685 CLGNO14967 610 aa3.83□□□□□ -1.8
CD44-219ENST00000525685 SCAMP1O15126 338 aa3.83□□□□□ -1.8
CD44-219ENST00000525685 HCRTR2O43614 444 aa3.83□□□□□ -1.8
CD44-219ENST00000525685 PLRG1O43660 514 aaKnown RBP3.83□□□□□ -1.8
CD44-219ENST00000525685 CLDN14O95500 239 aa3.83□□□□□ -1.8
CD44-219ENST00000525685 HIST1H2ABP04908 130 aa3.83□□□□□ -1.8
CD44-219ENST00000525685 IGKV5-2P06315 115 aa3.83□□□□□ -1.8
CD44-219ENST00000525685 ALOX12P18054 663 aa3.83□□□□□ -1.8
CD44-219ENST00000525685 HIST1H2ADP20671 130 aa3.83□□□□□ -1.8
CD44-219ENST00000525685 UBA1P22314 1058 aaKnown RBP3.83□□□□□ -1.8
CD44-219ENST00000525685 IL15P40933 162 aaPredicted RBP3.83□□□□□ -1.8
CD44-219ENST00000525685 CLCNKAP51800 687 aa3.83□□□□□ -1.8
CD44-219ENST00000525685 SEC61BP60468 96 aaKnown RBP3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms