RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 PROKR1Q8TCW9 393 aa9.57□□□□□ -0.88
SYNE1-230ENST00000495090 ATL1Q8WXF7 558 aa9.57□□□□□ -0.88
SYNE1-230ENST00000495090 KIAA1191Q96A73 305 aa9.57□□□□□ -0.88
SYNE1-230ENST00000495090 TBC1D20Q96BZ9 403 aa9.57□□□□□ -0.88
SYNE1-230ENST00000495090 NSUN5Q96P11 429 aaKnown RBP9.57□□□□□ -0.88
SYNE1-230ENST00000495090 PPP1R16BQ96T49 567 aa9.57□□□□□ -0.88
SYNE1-230ENST00000495090 CCDC90BQ9GZT6 254 aa9.57□□□□□ -0.88
SYNE1-230ENST00000495090 CATSPERBQ9H7T0 1116 aa9.57□□□□□ -0.88
SYNE1-230ENST00000495090 KAT8Q9H7Z6 458 aaKnown RBP9.57□□□□□ -0.88
SYNE1-230ENST00000495090 RBM22Q9NW64 420 aaKnown RBP eCLIP9.57□□□□□ -0.88
SYNE1-230ENST00000495090 FNIP2Q9P278 1114 aa9.57□□□□□ -0.88
SYNE1-230ENST00000495090 GJD2Q9UKL4 321 aa9.57□□□□□ -0.88
SYNE1-230ENST00000495090 EIF3LQ9Y262 564 aaKnown RBP9.57□□□□□ -0.88
SYNE1-230ENST00000495090 PTGES3LE9PB15 166 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 H0Y626 953 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 CLDN5O00501 218 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 KLK8O60259 260 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 RECQL4O94761 1208 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 SCELO95171 688 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 TRIM16O95361 564 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 LGALS2P05162 132 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 MAP3K7CLP57077 242 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 VBP1P61758 197 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 ADAM17P78536 824 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 TIAL1Q01085 375 aaKnown RBP eCLIP9.56□□□□□ -0.88
SYNE1-230ENST00000495090 ZNF45Q02386 682 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 TTLL4Q14679 1199 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 CATSPEREQ5SY80 951 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 CAPN13Q6MZZ7 669 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-230ENST00000495090 TXNDC11Q6PKC3 985 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 BHLHA9Q7RTU4 235 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 HEATR4Q86WZ0 1026 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 FBXO39Q8N4B4 442 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 PSMA8Q8TAA3 256 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 STAG3L4Q8TBR4 150 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 CAPSLQ8WWF8 208 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 TP53INP1Q96A56 240 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 LGALS12Q96DT0 336 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 ERLEC1Q96DZ1 483 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 SLC47A1Q96FL8 570 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 DHRS1Q96LJ7 313 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 ZNF583Q96ND8 569 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 DERL2Q9GZP9 239 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 GABARAPL1Q9H0R8 117 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 SMOC2Q9H3U7 446 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 NEK6Q9HC98 313 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 TM9SF3Q9HD45 589 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 POLE4Q9NR33 117 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 SCN3BQ9NY72 215 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 TMEFF2Q9UIK5 374 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-230ENST00000495090 NEUROG3Q9Y4Z2 214 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 SNX10Q9Y5X0 201 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 NUP205Q92621 2012 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 PABPN1LA6NDY0 278 aaKnown RBP9.56□□□□□ -0.88
SYNE1-230ENST00000495090 LRRC14BA6NHZ5 514 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 AGAP5A6NIR3 686 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 TBKBP1A7MCY6 615 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 PRMT5O14744 637 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-230ENST00000495090 SCO2O43819 266 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 KCNK2O95069 426 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 PARNO95453 639 aaKnown RBP9.56□□□□□ -0.88
SYNE1-230ENST00000495090 RETP07949 1114 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 TXNP10599 105 aaKnown RBP9.56□□□□□ -0.88
SYNE1-230ENST00000495090 PCNAP12004 261 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 MSH3P20585 1137 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 DCTP40126 519 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 CASP2P42575 452 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 HUNKP57058 714 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 PRKCDQ05655 676 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 MAPK11Q15759 364 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 NPTX1Q15818 432 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 ZNF404Q494X3 552 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 VARS2Q5ST30 1063 aaKnown RBP9.56□□□□□ -0.88
SYNE1-230ENST00000495090 MANEALQ5VSG8 457 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 TMEM236Q5W0B7 351 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 PNCKQ6P2M8 343 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 NOTUMQ6P988 496 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 SPESP1Q6UW49 350 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 VASH1Q7L8A9 365 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-230ENST00000495090 PAGE2Q7Z2X7 111 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 B3GNT8Q7Z7M8 397 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 RALGPS2Q86X27 583 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-230ENST00000495090 PLD3Q8IV08 490 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 CHCHD4Q8N4Q1 142 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.56□□□□□ -0.88
SYNE1-230ENST00000495090 ARL10Q8N8L6 244 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 ZNF548Q8NEK5 533 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-230ENST00000495090 OR2T12Q8NG77 320 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 MCFD2Q8NI22 146 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 FCGR1BQ92637 280 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 EXT2Q93063 718 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 IMP4Q96G21 291 aaKnown RBP9.56□□□□□ -0.88
SYNE1-230ENST00000495090 SNX18Q96RF0 628 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 MED10Q9BTT4 135 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 TRIM62Q9BVG3 475 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 ALOXE3Q9BYJ1 711 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 SLC39A8Q9C0K1 460 aa9.56□□□□□ -0.88
SYNE1-230ENST00000495090 NXF2Q9GZY0 626 aaKnown RBP9.56□□□□□ -0.88
SYNE1-230ENST00000495090 TP63Q9H3D4 680 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-230ENST00000495090 ACTR8Q9H981 624 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms