RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 GTF2H4Q92759 462 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 ZDHHC16Q969W1 377 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 MALSU1Q96EH3 234 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 NEDD4LQ96PU5 975 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 APOL2Q9BQE5 337 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 SLC32A1Q9H598 525 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 ZFP14Q9HCL3 533 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 MRPL17Q9NRX2 175 aaKnown RBP4.6□□□□□ -1.67
SCN1A-202ENST00000375405 TDP1Q9NUW8 608 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 PIH1D1Q9NWS0 290 aaKnown RBP4.6□□□□□ -1.67
SCN1A-202ENST00000375405 B3GNT2Q9NY97 397 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF282Q9UDV7 671 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-202ENST00000375405 LCMT1Q9UIC8 334 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 FEM1BQ9UK73 627 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 SSR3Q9UNL2 185 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 MGAT4BQ9UQ53 548 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 TEX13DA0A0J9YY54 714 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-202ENST00000375405 NPIPA7E9PJI5 369 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 HAS3O00219 553 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 BBOX1O75936 387 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 NPIPA8P0DM63 369 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 MAT2AP31153 395 aaKnown RBP4.6□□□□□ -1.67
SCN1A-202ENST00000375405 PRCPP42785 496 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 MCAMP43121 646 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 HTD2P86397 168 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 EPHA10Q5JZY3 1008 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 GALNT17Q6IS24 598 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 STRA8Q7Z7C7 330 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 STK35Q8TDR2 534 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 ZNRF4Q8WWF5 429 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 ACOT12Q8WYK0 555 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 LCORQ96JN0 433 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-202ENST00000375405 PANX1Q96RD7 426 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 CDK5RAP1Q96SZ6 601 aaKnown RBP4.6□□□□□ -1.67
SCN1A-202ENST00000375405 GORASP1Q9BQQ3 440 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 DCLK3Q9C098 648 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 MTMR12Q9C0I1 747 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 ILKAPQ9H0C8 392 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-202ENST00000375405 DYNLRB1Q9NP97 96 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 LAMP5Q9UJQ1 280 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 NUDT5Q9UKK9 219 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 TPRKBQ9Y3C4 175 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 FKBP7Q9Y680 259 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 UGGT2Q9NYU1 1516 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 DCDC2BA2VCK2 349 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 LRRN3E7EW58 273 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF189O75820 626 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-202ENST00000375405 SERPINE1P05121 402 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 VIL1P09327 827 aaKnown RBP4.6□□□□□ -1.67
SCN1A-202ENST00000375405 BCKDHAP12694 445 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 CAPGP40121 348 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 CCZ1BP86790 482 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 CCZ1P86791 482 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-202ENST00000375405 SLC35F1Q5T1Q4 408 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 OFCC1Q8IZS5 231 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 ZSWIM2Q8NEG5 633 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 VANGL1Q8TAA9 524 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF473Q8WTR7 871 aaKnown RBP4.6□□□□□ -1.67
SCN1A-202ENST00000375405 TSPEARQ8WU66 669 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 ARNTL2Q8WYA1 636 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF559Q9BR84 538 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 SLC39A3Q9BRY0 314 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 SLC25A23Q9BV35 468 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 METTL7AQ9H8H3 244 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 PRDM8Q9NQV8 689 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 ADGRE2Q9UHX3 823 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 ACSL6Q9UKU0 697 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 CNOT6Q9ULM6 557 aaKnown RBP4.6□□□□□ -1.67
SCN1A-202ENST00000375405 PHTF1Q9UMS5 762 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 TP53TG5Q9Y2B4 290 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 CNTNAP2Q9UHC6 1331 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 PPP1R2P9O14990 202 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 RARAP10276 462 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 ERVFC1-1P60608 527 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 MTMR2Q13614 643 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 RAB30Q15771 203 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 VARS2Q5ST30 1063 aaKnown RBP4.6□□□□□ -1.67
SCN1A-202ENST00000375405 KIAA1614Q5VZ46 1190 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 IL27RAQ6UWB1 636 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 SKA3Q8IX90 412 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 SEPT12Q8IYM1 358 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 NXPE1Q8N323 547 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 WDR31Q8NA23 367 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 BPIFCQ8NFQ6 507 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 OR4D6Q8NGJ1 314 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 NMD3Q96D46 503 aaKnown RBP4.6□□□□□ -1.67
SCN1A-202ENST00000375405 RNPC3Q96LT9 517 aaKnown RBP4.6□□□□□ -1.67
SCN1A-202ENST00000375405 NODALQ96S42 347 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 PECRQ9BY49 303 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 SLC6A17Q9H1V8 727 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 FKRPQ9H9S5 495 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 PLSCR3Q9NRY6 295 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 MFHAS1Q9Y4C4 1052 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 CLCA3PQ9Y6N3 262 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 A0A1W2PP64 1363 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 RGS12O14924 1447 aa4.6□□□□□ -1.67
SCN1A-202ENST00000375405 OR12D1P0DN82 309 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 ATF6P18850 670 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 UGT1A1P22309 533 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 TNFSF4P23510 183 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms