RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 EPHA6Q9UF33 1036 aa23.5■■□□□ 1.35
LSM4-202ENST00000593564 MRPS18BQ9Y676 258 aaKnown RBP23.5■■□□□ 1.35
LSM4-202ENST00000593564 NBASA2RRP1 2371 aa23.5■■□□□ 1.35
LSM4-202ENST00000593564 RASSF9O75901 435 aa23.49■■□□□ 1.35
LSM4-202ENST00000593564 SLC1A1P43005 524 aa23.49■■□□□ 1.35
LSM4-202ENST00000593564 NR2C2P49116 596 aa23.49■■□□□ 1.35
LSM4-202ENST00000593564 DRG2P55039 364 aaKnown RBP23.49■■□□□ 1.35
LSM4-202ENST00000593564 GTF2H3Q13889 308 aa23.49■■□□□ 1.35
LSM4-202ENST00000593564 ATP1A1-AS1Q5TC04 95 aa23.49■■□□□ 1.35
LSM4-202ENST00000593564 ZDHHC20Q5W0Z9 365 aa23.49■■□□□ 1.35
LSM4-202ENST00000593564 MFSD7Q6UXD7 560 aa23.49■■□□□ 1.35
LSM4-202ENST00000593564 BZW1Q7L1Q6 419 aaKnown RBP23.49■■□□□ 1.35
LSM4-202ENST00000593564 RHOT1Q8IXI2 618 aa23.49■■□□□ 1.35
LSM4-202ENST00000593564 DTX3LQ8TDB6 740 aa23.49■■□□□ 1.35
LSM4-202ENST00000593564 KLHL6Q8WZ60 621 aa23.49■■□□□ 1.35
LSM4-202ENST00000593564 ZDHHC12Q96GR4 267 aa23.49■■□□□ 1.35
LSM4-202ENST00000593564 ABHD17AQ96GS6 310 aa23.49■■□□□ 1.35
LSM4-202ENST00000593564 RAB33BQ9H082 229 aa23.49■■□□□ 1.35
LSM4-202ENST00000593564 SPTLC3Q9NUV7 552 aa23.49■■□□□ 1.35
LSM4-202ENST00000593564 UBP1Q9NZI7 540 aa23.49■■□□□ 1.35
LSM4-202ENST00000593564 FAM153AQ9UHL3 310 aa23.49■■□□□ 1.35
LSM4-202ENST00000593564 CROTQ9UKG9 612 aa23.49■■□□□ 1.35
LSM4-202ENST00000593564 KCTD3Q9Y597 815 aa23.49■■□□□ 1.35
LSM4-202ENST00000593564 LOC285095A0A1B0GVY8 99 aa23.48■■□□□ 1.35
LSM4-202ENST00000593564 GOLGA6L3A6NEY3 463 aa23.48■■□□□ 1.35
LSM4-202ENST00000593564 KIF1CO43896 1103 aaKnown RBP23.48■■□□□ 1.35
LSM4-202ENST00000593564 KCNJ13O60928 360 aa23.48■■□□□ 1.35
LSM4-202ENST00000593564 NDUFA10O95299 355 aa23.48■■□□□ 1.35
LSM4-202ENST00000593564 FGF5P12034 268 aa23.48■■□□□ 1.35
LSM4-202ENST00000593564 CD68P34810 354 aaPredicted RBP23.48■■□□□ 1.35
LSM4-202ENST00000593564 DLSTP36957 453 aa23.48■■□□□ 1.35
LSM4-202ENST00000593564 SEPT6Q14141 434 aa23.48■■□□□ 1.35
LSM4-202ENST00000593564 CACHD1Q5VU97 1274 aa23.48■■□□□ 1.35
LSM4-202ENST00000593564 KDELC1Q6UW63 502 aa23.48■■□□□ 1.35
LSM4-202ENST00000593564 GALNT6Q8NCL4 622 aa23.48■■□□□ 1.35
LSM4-202ENST00000593564 GDAP1Q8TB36 358 aa23.48■■□□□ 1.35
LSM4-202ENST00000593564 TFB1MQ8WVM0 346 aaKnown RBP23.48■■□□□ 1.35
LSM4-202ENST00000593564 STAMBPL1Q96FJ0 436 aa23.48■■□□□ 1.35
LSM4-202ENST00000593564 CCDC42Q96M95 316 aa23.48■■□□□ 1.35
LSM4-202ENST00000593564 CHP1Q99653 195 aa23.48■■□□□ 1.35
LSM4-202ENST00000593564 IL26Q9NPH9 171 aa23.48■■□□□ 1.35
LSM4-202ENST00000593564 ABHD10Q9NUJ1 306 aa23.48■■□□□ 1.35
LSM4-202ENST00000593564 WDR37Q9Y2I8 494 aa23.48■■□□□ 1.35
LSM4-202ENST00000593564 PCDHB3Q9Y5E6 796 aa23.48■■□□□ 1.35
LSM4-202ENST00000593564 KIAA0754O94854 1291 aa23.47■■□□□ 1.35
LSM4-202ENST00000593564 EPOP01588 193 aa23.47■■□□□ 1.35
LSM4-202ENST00000593564 HALP42357 657 aa23.47■■□□□ 1.35
LSM4-202ENST00000593564 CDKN2BP42772 138 aa23.47■■□□□ 1.35
LSM4-202ENST00000593564 WNT3AP56704 352 aa23.47■■□□□ 1.35
LSM4-202ENST00000593564 WASHC5Q12768 1159 aa23.47■■□□□ 1.35
LSM4-202ENST00000593564 TFDP2Q14188 446 aa23.47■■□□□ 1.35
LSM4-202ENST00000593564 TAZQ16635 292 aa23.47■■□□□ 1.35
LSM4-202ENST00000593564 COLEC12Q5KU26 742 aa23.47■■□□□ 1.35
LSM4-202ENST00000593564 RASGRP3Q8IV61 690 aa23.47■■□□□ 1.35
LSM4-202ENST00000593564 TTC30BQ8N4P2 665 aa23.47■■□□□ 1.35
LSM4-202ENST00000593564 ANP32EQ9BTT0 268 aa23.47■■□□□ 1.35
LSM4-202ENST00000593564 NHEJ1Q9H9Q4 299 aaPredicted RBP23.47■■□□□ 1.35
LSM4-202ENST00000593564 SAE1Q9UBE0 346 aaPredicted RBP23.47■■□□□ 1.35
LSM4-202ENST00000593564 TRIM10Q9UDY6 481 aa23.47■■□□□ 1.35
LSM4-202ENST00000593564 LRRK2Q5S007 2527 aa23.47■■□□□ 1.35
LSM4-202ENST00000593564 CBFA2T2O43439 604 aa23.46■■□□□ 1.35
LSM4-202ENST00000593564 TNNT1P13805 278 aa23.46■■□□□ 1.35
LSM4-202ENST00000593564 NELFEP18615 380 aaKnown RBP23.46■■□□□ 1.35
LSM4-202ENST00000593564 NFKB1P19838 968 aa23.46■■□□□ 1.35
LSM4-202ENST00000593564 FOXK1P85037 733 aa23.46■■□□□ 1.35
LSM4-202ENST00000593564 DMPKQ09013 629 aa23.46■■□□□ 1.35
LSM4-202ENST00000593564 NOMO1Q15155 1222 aa23.46■■□□□ 1.35
LSM4-202ENST00000593564 TCEAL1Q15170 157 aa23.46■■□□□ 1.35
LSM4-202ENST00000593564 LARP7Q4G0J3 582 aaKnown RBP eCLIP23.46■■□□□ 1.35
LSM4-202ENST00000593564 LACTB2Q53H82 288 aaPredicted RBP23.46■■□□□ 1.35
LSM4-202ENST00000593564 IRGCQ6NXR0 463 aa23.46■■□□□ 1.35
LSM4-202ENST00000593564 CYB5D1Q6P9G0 228 aa23.46■■□□□ 1.35
LSM4-202ENST00000593564 FAM92BQ6ZTR7 304 aa23.46■■□□□ 1.35
LSM4-202ENST00000593564 RNF31Q96EP0 1072 aa23.46■■□□□ 1.35
LSM4-202ENST00000593564 ELMO2Q96JJ3 720 aa23.46■■□□□ 1.35
LSM4-202ENST00000593564 TTC25Q96NG3 672 aa23.46■■□□□ 1.35
LSM4-202ENST00000593564 ZCCHC2Q9C0B9 1178 aaKnown RBP23.46■■□□□ 1.35
LSM4-202ENST00000593564 ZNF106Q9H2Y7 1883 aaKnown RBP23.46■■□□□ 1.35
LSM4-202ENST00000593564 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP23.46■■□□□ 1.35
LSM4-202ENST00000593564 HACD3Q9P035 362 aa23.46■■□□□ 1.35
LSM4-202ENST00000593564 IL17CQ9P0M4 197 aa23.46■■□□□ 1.35
LSM4-202ENST00000593564 SEMA5BQ9P283 1151 aa23.46■■□□□ 1.35
LSM4-202ENST00000593564 KCND3Q9UK17 655 aa23.46■■□□□ 1.35
LSM4-202ENST00000593564 HYOU1Q9Y4L1 999 aa23.46■■□□□ 1.35
LSM4-202ENST00000593564 KCNMB2Q9Y691 235 aa23.46■■□□□ 1.35
LSM4-202ENST00000593564 MTSS1O43312 755 aa23.45■■□□□ 1.34
LSM4-202ENST00000593564 SPAG6O75602 509 aa23.45■■□□□ 1.34
LSM4-202ENST00000593564 TPM1P09493 284 aa23.45■■□□□ 1.34
LSM4-202ENST00000593564 PECAM1P16284 738 aaPredicted RBP23.45■■□□□ 1.34
LSM4-202ENST00000593564 COMTP21964 271 aa23.45■■□□□ 1.34
LSM4-202ENST00000593564 SPAM1P38567 509 aa23.45■■□□□ 1.34
LSM4-202ENST00000593564 TNNT3P45378 269 aaPredicted RBP23.45■■□□□ 1.34
LSM4-202ENST00000593564 SIRPB2Q5JXA9 342 aa23.45■■□□□ 1.34
LSM4-202ENST00000593564 AMZ2Q86W34 360 aa23.45■■□□□ 1.34
LSM4-202ENST00000593564 PPP1R3BQ86XI6 285 aa23.45■■□□□ 1.34
LSM4-202ENST00000593564 LNPEPQ9UIQ6 1025 aa23.45■■□□□ 1.34
LSM4-202ENST00000593564 INTUQ9ULD6 942 aa23.45■■□□□ 1.34
LSM4-202ENST00000593564 RELNP78509 3460 aa23.45■■□□□ 1.34
LSM4-202ENST00000593564 SPOPO43791 374 aa23.44■■□□□ 1.34
LSM4-202ENST00000593564 CST8O60676 142 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms