RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 LCATP04180 440 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 OR52Z1P0C646 297 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 DANCRP0C864 163 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 KELP23276 732 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 RPL3P39023 403 aaKnown RBP4.96□□□□□ -1.62
SCFD1-209ENST00000553280 RFX5P48382 616 aaPredicted RBP4.96□□□□□ -1.62
SCFD1-209ENST00000553280 ENTPD1P49961 510 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 BMXP51813 675 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 CAPZA1P52907 286 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 SCN1BQ07699 218 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 GAGE2BQ13066 116 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 HNF4GQ14541 408 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 PTGR1Q14914 329 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 VWC2Q2TAL6 325 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 GAGE2EQ4V326 116 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 OTUD1Q5VV17 481 aaPredicted RBP4.96□□□□□ -1.62
SCFD1-209ENST00000553280 C18orf63Q68DL7 685 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 GAGE2AQ6NT46 116 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 ZNF534Q76KX8 674 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 PIWIL3Q7Z3Z3 882 aaKnown RBP4.96□□□□□ -1.62
SCFD1-209ENST00000553280 TMEM173Q86WV6 379 aaPredicted RBP4.96□□□□□ -1.62
SCFD1-209ENST00000553280 MFN1Q8IWA4 741 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 TMCO5AQ8N6Q1 288 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 EXD1Q8NHP7 514 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 KCNE4Q8WWG9 221 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 ERLEC1Q96DZ1 483 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 ERO1AQ96HE7 468 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 PLAC1Q9HBJ0 212 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 CHCHD3Q9NX63 227 aaKnown RBP4.96□□□□□ -1.62
SCFD1-209ENST00000553280 GAGE2DQ9UEU5 116 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 SNX5Q9Y5X3 404 aa4.96□□□□□ -1.62
SCFD1-209ENST00000553280 A0A087WV48 116 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 BECN2A8MW95 431 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 TMEM189-UBE2V1I3L0A0 370 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 DNM1LO00429 736 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 ANKRD28O15084 1053 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 STX6O43752 255 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 FGBP02675 491 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 CASTP20810 708 aaKnown RBP4.95□□□□□ -1.62
SCFD1-209ENST00000553280 HSPA4P34932 840 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 ZNF75DP51815 510 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 TAS2R38P59533 333 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 CDK3Q00526 305 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 HSPB3Q12988 150 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 UBE2V1Q13404 147 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 NR1D2Q14995 579 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 RBMS2Q15434 407 aaKnown RBP4.95□□□□□ -1.62
SCFD1-209ENST00000553280 AMZ1Q400G9 498 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 FSCBQ5H9T9 825 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 DNTTIP2Q5QJE6 756 aaKnown RBP4.95□□□□□ -1.62
SCFD1-209ENST00000553280 C6orf136Q5SQH8 315 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 RNASEH2BQ5TBB1 312 aaKnown RBP4.95□□□□□ -1.62
SCFD1-209ENST00000553280 KRT39Q6A163 491 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 FAM109BQ6ICB4 259 aaPredicted RBP4.95□□□□□ -1.62
SCFD1-209ENST00000553280 IYDQ6PHW0 289 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 BRAT1Q6PJG6 821 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 FIGLAQ6QHK4 219 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 PPP1R21Q6ZMI0 780 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 Q6ZTK2 550 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 MSANTD1Q6ZTZ1 278 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 ATG9AQ7Z3C6 839 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 CCDC91Q7Z6B0 441 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 CHERPQ8IWX8 916 aaKnown RBP4.95□□□□□ -1.62
SCFD1-209ENST00000553280 NUP93Q8N1F7 819 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 SIX6OS1Q8N1H7 587 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 MAGEC3Q8TD91 643 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 ATL1Q8WXF7 558 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 DNAAF4Q8WXU2 420 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 MR1Q95460 341 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 CCDC114Q96M63 670 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 ZNF558Q96NG5 402 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 OLFM1Q99784 485 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 MOV10L1Q9BXT6 1211 aaKnown RBP4.95□□□□□ -1.62
SCFD1-209ENST00000553280 DNAI2Q9GZS0 605 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 NRIP3Q9NQ35 241 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 MCM9Q9NXL9 1143 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 RCC2Q9P258 522 aaKnown RBP4.95□□□□□ -1.62
SCFD1-209ENST00000553280 MTRRQ9UBK8 725 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 SLC24A2Q9UI40 661 aa4.95□□□□□ -1.62
SCFD1-209ENST00000553280 IGLV5-39A0A0G2JS06 123 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 HTR3EA5X5Y0 456 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 HEPACAM2A8MVW5 462 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 H0YAE9 185 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 H0YGN5 161 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 TO15178 435 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 ZBTB43O43298 467 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 SSX4O60224 188 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 TSPAN1O60635 241 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 GOSR1O95249 250 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 SRCP12931 536 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 PRF1P14222 555 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 KCNA5P22460 613 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 GABRA5P31644 462 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 MXI1P50539 228 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 NUDT6P53370 316 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 CLDN20P56880 219 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 SEC61BP60468 96 aaKnown RBP4.94□□□□□ -1.62
SCFD1-209ENST00000553280 SNRPEP62304 92 aaKnown RBP4.94□□□□□ -1.62
SCFD1-209ENST00000553280 TUBB4BP68371 445 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 ACSM1Q08AH1 577 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms