RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	SCG3	Q8WXD2	468 aa	Known RBP	10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	LPGAT1	Q92604	370 aa		10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	CAVIN3	Q969G5	261 aa		10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	CCDC97	Q96F63	343 aa	Predicted RBP	10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	ATXN7L3B	Q96GX2	97 aa		10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	ELF4	Q99607	663 aa	Predicted RBP	10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	TSSK1B	Q9BXA7	367 aa		10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	TXLNGY	Q9BZA5	131 aa		10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	TCEAL2	Q9H3H9	227 aa	Predicted RBP	10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	ERVMER34-1	Q9H9K5	563 aa		10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	SARS2	Q9NP81	518 aa	Known RBP	10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	SMYD2	Q9NRG4	433 aa		10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	GPR27	Q9NS67	375 aa		10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	SEMA4G	Q9NTN9	838 aa		10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	INTS10	Q9NVR2	710 aa	Known RBP	10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	SPAST	Q9UBP0	616 aa		10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	FAM8A1	Q9UBU6	413 aa		10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	APOBEC3B	Q9UH17	382 aa	Known RBP	10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	RABGEF1	Q9UJ41	708 aa		10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	GNPTG	Q9UJJ9	305 aa		10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	DOLK	Q9UPQ8	538 aa		10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	DNAJC16	Q9Y2G8	782 aa		10.02	□□□□□ -0.81
CPSF7-221	ENST00000543545	IGLV3-16	A0A075B6K0	115 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	EXOC1L	A0A1B0GW35	172 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545		E5RI56	91 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545		H3BMM5	538 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	QSOX1	O00391	747 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	DFNA5	O60443	496 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	DNAJC6	O75061	913 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	FTH1	P02794	183 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	ESR1	P03372	595 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	FUCA1	P04066	466 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	INHBA	P08476	426 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	ABHD2	P08910	425 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	PKM	P14618	531 aa	Known RBP	10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	NME1	P15531	152 aa	Known RBP	10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	ENG	P17813	658 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	CHRM3	P20309	590 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	SAT1	P21673	171 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	RPS3	P23396	243 aa	Known RBP eCLIP	10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	HSD17B3	P37058	310 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	GP5	P40197	560 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	ABCG1	P45844	678 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	IL9R	Q01113	521 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	ILF3	Q12906	894 aa	Known RBP eCLIP	10.01	□□□□□ -0.81	2e-6	■■■■□ 21.5
CPSF7-221	ENST00000543545	NAB1	Q13506	487 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	EFTUD2	Q15029	972 aa	Known RBP eCLIP	10.01	□□□□□ -0.81	1e-7	■■■■■ 43.9
CPSF7-221	ENST00000543545	ELOC	Q15369	112 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	AASDH	Q4L235	1098 aa	Predicted RBP	10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	ZNF789	Q5FWF6	425 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	KCTD16	Q68DU8	428 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	PACS1	Q6VY07	963 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	TAF8	Q7Z7C8	310 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	AMZ2	Q86W34	360 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	KRT222	Q8N1A0	295 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	OR2I1P	Q8NGU4	316 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	PHOX2B	Q99453	314 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	CPNE1	Q99829	537 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	CCM2	Q9BSQ5	444 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	GSDMC	Q9BYG8	508 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	TMEM168	Q9H0V1	697 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	OSGEPL1	Q9H4B0	414 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	ACSS3	Q9H6R3	686 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	TM7SF3	Q9NS93	570 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	KLC4	Q9NSK0	619 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	ARGLU1	Q9NWB6	273 aa	Predicted RBP	10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	KLF15	Q9UIH9	416 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	GPR34	Q9UPC5	381 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	KCNK6	Q9Y257	313 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	PLEKHM1	Q9Y4G2	1056 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	PCDHB1	Q9Y5F3	818 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	PSAT1	Q9Y617	370 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	DGKB	Q9Y6T7	804 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	KMT2E	Q8IZD2	1858 aa		10.01	□□□□□ -0.81
CPSF7-221	ENST00000543545	ANKRD36	A6QL64	1941 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545		A0A1B0GTQ1	180 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	CCDC151	A5D8V7	595 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	MGAT4D	A6NG13	374 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	IQCF5	A8MTL0	148 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	PROB1	E7EW31	1015 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	CHUK	O15111	745 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	YKT6	O15498	198 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	SNX2	O60749	519 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	GABRB3	P28472	473 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	SPR	P35270	261 aa	Predicted RBP	10	□□□□□ -0.81
CPSF7-221	ENST00000543545	ACTR1B	P42025	376 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	RXRG	P48443	463 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	CCT8	P50990	548 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	SLC12A2	P55011	1212 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	CSE1L	P55060	971 aa	Known RBP	10	□□□□□ -0.81
CPSF7-221	ENST00000543545	ACTR1A	P61163	376 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	CTBS	Q01459	385 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	IFFO1	Q0D2I5	559 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	BNIP3	Q12983	259 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	CSRP2	Q16527	193 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	ZNF423	Q2M1K9	1284 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	BCL7A	Q4VC05	210 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	SYTL3	Q4VX76	610 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	GRTP1	Q5TC63	336 aa		10	□□□□□ -0.81
CPSF7-221	ENST00000543545	SLC30A9	Q6PML9	568 aa		10	□□□□□ -0.81

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