RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 LPGAT1Q92604 370 aa16.89■□□□□ 0.29
LIG1-204ENST00000542460 OR2M4Q96R27 311 aa16.89■□□□□ 0.29
LIG1-204ENST00000542460 CLPBQ9H078 707 aa16.89■□□□□ 0.29
LIG1-204ENST00000542460 TCEAL2Q9H3H9 227 aaPredicted RBP16.89■□□□□ 0.29
LIG1-204ENST00000542460 TRNAU1APQ9NX07 287 aaKnown RBP16.89■□□□□ 0.29
LIG1-204ENST00000542460 NSMCE4AQ9NXX6 385 aa16.89■□□□□ 0.29
LIG1-204ENST00000542460 GPSM3Q9Y4H4 160 aa16.89■□□□□ 0.29
LIG1-204ENST00000542460 DNMT3AQ9Y6K1 912 aaPredicted RBP16.89■□□□□ 0.29
LIG1-204ENST00000542460 UBA6A0AVT1 1052 aaPredicted RBP16.88■□□□□ 0.29
LIG1-204ENST00000542460 FAM159BA6NKW6 160 aa16.88■□□□□ 0.29
LIG1-204ENST00000542460 F8W8V4 182 aa16.88■□□□□ 0.29
LIG1-204ENST00000542460 ACSL3O95573 720 aa16.88■□□□□ 0.29
LIG1-204ENST00000542460 OR56A5P0C7T3 313 aa16.88■□□□□ 0.29
LIG1-204ENST00000542460 RPS3P23396 243 aaKnown RBP eCLIP16.88■□□□□ 0.29
LIG1-204ENST00000542460 LRP8Q14114 963 aa16.88■□□□□ 0.29
LIG1-204ENST00000542460 BCL7AQ4VC05 210 aa16.88■□□□□ 0.29
LIG1-204ENST00000542460 EMBQ6PCB8 327 aa16.88■□□□□ 0.29
LIG1-204ENST00000542460 PRR23CQ6ZRP0 262 aa16.88■□□□□ 0.29
LIG1-204ENST00000542460 GALNT7Q86SF2 657 aa16.88■□□□□ 0.29
LIG1-204ENST00000542460 SLC26A11Q86WA9 606 aa16.88■□□□□ 0.29
LIG1-204ENST00000542460 LRRC6Q86X45 466 aa16.88■□□□□ 0.29
LIG1-204ENST00000542460 ZNF547Q8IVP9 402 aa16.88■□□□□ 0.29
LIG1-204ENST00000542460 FUT8Q9BYC5 575 aa16.88■□□□□ 0.29
LIG1-204ENST00000542460 TMEM168Q9H0V1 697 aa16.88■□□□□ 0.29
LIG1-204ENST00000542460 P2RY12Q9H244 342 aa16.88■□□□□ 0.29
LIG1-204ENST00000542460 IL21RQ9HBE5 538 aa16.88■□□□□ 0.29
LIG1-204ENST00000542460 FBXO6Q9NRD1 293 aaPredicted RBP16.88■□□□□ 0.29
LIG1-204ENST00000542460 SPASTQ9UBP0 616 aa16.88■□□□□ 0.29
LIG1-204ENST00000542460 PRKAB1Q9Y478 270 aa16.88■□□□□ 0.29
LIG1-204ENST00000542460 PCYT1BQ9Y5K3 369 aaPredicted RBP16.88■□□□□ 0.29
LIG1-204ENST00000542460 CACNA1EQ15878 2313 aa16.87■□□□□ 0.29
LIG1-204ENST00000542460 SCAMP1O15126 338 aa16.87■□□□□ 0.29
LIG1-204ENST00000542460 SGTAO43765 313 aa16.87■□□□□ 0.29
LIG1-204ENST00000542460 PIAS2O75928 621 aa16.87■□□□□ 0.29
LIG1-204ENST00000542460 HAUS5O94927 633 aa16.87■□□□□ 0.29
LIG1-204ENST00000542460 AHSGP02765 367 aa16.87■□□□□ 0.29
LIG1-204ENST00000542460 PRLHRP49683 370 aa16.87■□□□□ 0.29
LIG1-204ENST00000542460 CCT8P50990 548 aa16.87■□□□□ 0.29
LIG1-204ENST00000542460 SHBQ15464 509 aa16.87■□□□□ 0.29
LIG1-204ENST00000542460 PRRT3Q5FWE3 981 aa16.87■□□□□ 0.29
LIG1-204ENST00000542460 CRTC3Q6UUV7 619 aa16.87■□□□□ 0.29
LIG1-204ENST00000542460 CHST15Q7LFX5 561 aaPredicted RBP16.87■□□□□ 0.29
LIG1-204ENST00000542460 FSTL5Q8N475 847 aaPredicted RBP16.87■□□□□ 0.29
LIG1-204ENST00000542460 OR2I1PQ8NGU4 316 aa16.87■□□□□ 0.29
LIG1-204ENST00000542460 AENQ8WTP8 325 aaKnown RBP16.87■□□□□ 0.29
LIG1-204ENST00000542460 NAT14Q8WUY8 206 aa16.87■□□□□ 0.29
LIG1-204ENST00000542460 CYTH2Q99418 400 aa16.87■□□□□ 0.29
LIG1-204ENST00000542460 LRRC61Q9BV99 259 aa16.87■□□□□ 0.29
LIG1-204ENST00000542460 SMYD2Q9NRG4 433 aa16.87■□□□□ 0.29
LIG1-204ENST00000542460 DNAAF2Q9NVR5 837 aaKnown RBP16.87■□□□□ 0.29
LIG1-204ENST00000542460 CRYL1Q9Y2S2 319 aa16.87■□□□□ 0.29
LIG1-204ENST00000542460 PCDHB1Q9Y5F3 818 aa16.87■□□□□ 0.29
LIG1-204ENST00000542460 PRSS21Q9Y6M0 314 aa16.87■□□□□ 0.29
LIG1-204ENST00000542460 KLHL33A6NCF5 533 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 RIPK2O43353 540 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 KCNJ13O60928 360 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 POP7O75817 140 aaKnown RBP16.86■□□□□ 0.29
LIG1-204ENST00000542460 C1QAP02745 245 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 ESR1P03372 595 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 ZNF883P0CG24 379 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 EPHA8P29322 1005 aaPredicted RBP16.86■□□□□ 0.29
LIG1-204ENST00000542460 EIF3BP55884 814 aaKnown RBP16.86■□□□□ 0.29
LIG1-204ENST00000542460 MPP1Q00013 466 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 ILF3Q12906 894 aaKnown RBP eCLIP16.86■□□□□ 0.29
LIG1-204ENST00000542460 BNIP3Q12983 259 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 ELOCQ15369 112 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 KBTBD12Q3ZCT8 623 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 AASDHQ4L235 1098 aaPredicted RBP16.86■□□□□ 0.29
LIG1-204ENST00000542460 ZNF789Q5FWF6 425 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 UBAP2Q5T6F2 1119 aaKnown RBP16.86■□□□□ 0.29
LIG1-204ENST00000542460 C11orf96Q7Z7L8 435 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 CTAGE3PQ8IX95 158 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 SDR16C5Q8N3Y7 309 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 BEND7Q8N7W2 519 aaPredicted RBP16.86■□□□□ 0.29
LIG1-204ENST00000542460 ZNF548Q8NEK5 533 aaPredicted RBP16.86■□□□□ 0.29
LIG1-204ENST00000542460 LMX1AQ8TE12 382 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 LINC00615Q96LM1 132 aaPredicted RBP16.86■□□□□ 0.29
LIG1-204ENST00000542460 BIRC8Q96P09 236 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 TIMM29Q9BSF4 260 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 EDEM2Q9BV94 578 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 ACSS3Q9H6R3 686 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 TM7SF3Q9NS93 570 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 SLC17A6Q9P2U8 582 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 RABGEF1Q9UJ41 708 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 GNPTGQ9UJJ9 305 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 OTOGLQ3ZCN5 2332 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 PCDH15Q96QU1 1955 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 A0A087WUV0 522 aaPredicted RBP16.86■□□□□ 0.29
LIG1-204ENST00000542460 CXorf49A8MYA2 514 aaPredicted RBP16.86■□□□□ 0.29
LIG1-204ENST00000542460 H3BMM5 538 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 CTIFO43310 598 aaKnown RBP16.86■□□□□ 0.29
LIG1-204ENST00000542460 AQP9O43315 295 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 SDC3O75056 442 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 PIAS1O75925 651 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 FTH1P02794 183 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 ABHD2P08910 425 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 GSTM1P09488 218 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 VCLP18206 1134 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 DGKAP23743 735 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 GABRB3P28472 473 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms