RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 KLHL6Q8WZ60 621 aa20.67■□□□□ 0.9
SQSTM1-210ENST00000506042 AGAP3Q96P47 875 aa20.67■□□□□ 0.9
SQSTM1-210ENST00000506042 SLC40A1Q9NP59 571 aa20.67■□□□□ 0.9
SQSTM1-210ENST00000506042 BOD1L1Q8NFC6 3051 aa20.67■□□□□ 0.9
SQSTM1-210ENST00000506042 ZNF106Q9H2Y7 1883 aaKnown RBP20.67■□□□□ 0.9
SQSTM1-210ENST00000506042 A0A0A6YYK5 440 aaPredicted RBP20.66■□□□□ 0.9
SQSTM1-210ENST00000506042 MMP2P08253 660 aa20.66■□□□□ 0.9
SQSTM1-210ENST00000506042 NELFEP18615 380 aaKnown RBP20.66■□□□□ 0.9
SQSTM1-210ENST00000506042 RPL10P27635 214 aaKnown RBP20.66■□□□□ 0.9
SQSTM1-210ENST00000506042 FANCCQ00597 558 aa20.66■□□□□ 0.9
SQSTM1-210ENST00000506042 ITGA9Q13797 1035 aa20.66■□□□□ 0.9
SQSTM1-210ENST00000506042 GPR18Q14330 331 aa20.66■□□□□ 0.9
SQSTM1-210ENST00000506042 IGFBP7Q16270 282 aa20.66■□□□□ 0.9
SQSTM1-210ENST00000506042 ATP13A4Q4VNC1 1196 aa20.66■□□□□ 0.9
SQSTM1-210ENST00000506042 AMZ2Q86W34 360 aa20.66■□□□□ 0.9
SQSTM1-210ENST00000506042 OR8K5Q8NH50 307 aa20.66■□□□□ 0.9
SQSTM1-210ENST00000506042 ELMO2Q96JJ3 720 aa20.66■□□□□ 0.9
SQSTM1-210ENST00000506042 ZNF514Q96K75 400 aaPredicted RBP20.66■□□□□ 0.9
SQSTM1-210ENST00000506042 FERMT1Q9BQL6 677 aa20.66■□□□□ 0.9
SQSTM1-210ENST00000506042 FANCEQ9HB96 536 aa20.66■□□□□ 0.9
SQSTM1-210ENST00000506042 ARFGAP3Q9NP61 516 aa20.66■□□□□ 0.9
SQSTM1-210ENST00000506042 DDX56Q9NY93 547 aaKnown RBP20.66■□□□□ 0.9
SQSTM1-210ENST00000506042 ZNF624Q9P2J8 865 aaPredicted RBP20.66■□□□□ 0.9
SQSTM1-210ENST00000506042 PCYT1BQ9Y5K3 369 aaPredicted RBP20.66■□□□□ 0.9
SQSTM1-210ENST00000506042 DNMT3AQ9Y6K1 912 aaPredicted RBP20.66■□□□□ 0.9
SQSTM1-210ENST00000506042 PYGMP11217 842 aa20.65■□□□□ 0.9
SQSTM1-210ENST00000506042 VARSP26640 1264 aaKnown RBP20.65■□□□□ 0.9
SQSTM1-210ENST00000506042 ARHGAP25P42331 645 aa20.65■□□□□ 0.9
SQSTM1-210ENST00000506042 TMEM115Q12893 351 aaPredicted RBP20.65■□□□□ 0.9
SQSTM1-210ENST00000506042 FAM92BQ6ZTR7 304 aa20.65■□□□□ 0.9
SQSTM1-210ENST00000506042 APLFQ8IW19 511 aaPredicted RBP20.65■□□□□ 0.9
SQSTM1-210ENST00000506042 CARFQ8N187 725 aa20.65■□□□□ 0.9
SQSTM1-210ENST00000506042 PQLC3Q8N755 202 aa20.65■□□□□ 0.9
SQSTM1-210ENST00000506042 DTX3LQ8TDB6 740 aa20.65■□□□□ 0.9
SQSTM1-210ENST00000506042 LHX9Q9NQ69 397 aa20.65■□□□□ 0.9
SQSTM1-210ENST00000506042 TMEM63CQ9P1W3 806 aa20.65■□□□□ 0.9
SQSTM1-210ENST00000506042 PKP3Q9Y446 797 aa20.65■□□□□ 0.9
SQSTM1-210ENST00000506042 HECTD1Q9ULT8 2610 aa20.65■□□□□ 0.9
SQSTM1-210ENST00000506042 MAST4O15021 2626 aa20.64■□□□□ 0.9
SQSTM1-210ENST00000506042 UBA6A0AVT1 1052 aaPredicted RBP20.64■□□□□ 0.89
SQSTM1-210ENST00000506042 KLK3P07288 261 aaPredicted RBP20.64■□□□□ 0.89
SQSTM1-210ENST00000506042 FECHP22830 423 aa20.64■□□□□ 0.89
SQSTM1-210ENST00000506042 HMGCLP35914 325 aa20.64■□□□□ 0.89
SQSTM1-210ENST00000506042 NR2C2P49116 596 aa20.64■□□□□ 0.89
SQSTM1-210ENST00000506042 PGDP52209 483 aa20.64■□□□□ 0.89
SQSTM1-210ENST00000506042 ZBTB17Q13105 803 aa20.64■□□□□ 0.89
SQSTM1-210ENST00000506042 TRIM14Q14142 442 aa20.64■□□□□ 0.89
SQSTM1-210ENST00000506042 TFDP2Q14188 446 aa20.64■□□□□ 0.89
SQSTM1-210ENST00000506042 MESDQ14696 234 aa20.64■□□□□ 0.89
SQSTM1-210ENST00000506042 PPP2R5EQ16537 467 aa20.64■□□□□ 0.89
SQSTM1-210ENST00000506042 SLC18A3Q16572 532 aa20.64■□□□□ 0.89
SQSTM1-210ENST00000506042 CAVIN1Q6NZI2 390 aaKnown RBP20.64■□□□□ 0.89
SQSTM1-210ENST00000506042 SYVN1Q86TM6 617 aa20.64■□□□□ 0.89
SQSTM1-210ENST00000506042 RFX6Q8HWS3 928 aa20.64■□□□□ 0.89
SQSTM1-210ENST00000506042 RHOT2Q8IXI1 618 aa20.64■□□□□ 0.89
SQSTM1-210ENST00000506042 OGFRQ9NZT2 677 aa20.64■□□□□ 0.89
SQSTM1-210ENST00000506042 MRPS18BQ9Y676 258 aaKnown RBP20.64■□□□□ 0.89
SQSTM1-210ENST00000506042 SLC30A1Q9Y6M5 507 aa20.64■□□□□ 0.89
SQSTM1-210ENST00000506042 TTLL8A6PVC2 850 aa20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 AKR1B10O60218 316 aa20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 CPNE3O75131 537 aaKnown RBP20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 PIRTP0C851 137 aa20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 BPIP17213 487 aa20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 LEPRP48357 1165 aaKnown RBP20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 CD97P48960 835 aa20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 DRG2P55039 364 aaKnown RBP20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 SH3BP2P78314 561 aa20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 XRCC4Q13426 336 aa20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 LONRF2Q1L5Z9 754 aa20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 DNTTIP2Q5QJE6 756 aaKnown RBP20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 SLC9A4Q6AI14 798 aa20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 OOSP2Q86WS3 158 aa20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 HPS6Q86YV9 775 aa20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 CNTD1Q8N815 330 aa20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 ZFPM2Q8WW38 1151 aa20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 RSC1A1Q92681 617 aa20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 MIB2Q96AX9 1013 aa20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 TRIB3Q96RU7 358 aa20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 ACSS2Q9NR19 701 aa20.63■□□□□ 0.89
SQSTM1-210ENST00000506042 TLCD2A6NGC4 264 aa20.62■□□□□ 0.89
SQSTM1-210ENST00000506042 OR52A4PA6NMU1 304 aa20.62■□□□□ 0.89
SQSTM1-210ENST00000506042 KRT1P04264 644 aa20.62■□□□□ 0.89
SQSTM1-210ENST00000506042 TMEM253P0C7T8 217 aa20.62■□□□□ 0.89
SQSTM1-210ENST00000506042 ZNF28P17035 718 aa20.62■□□□□ 0.89
SQSTM1-210ENST00000506042 SPAM1P38567 509 aa20.62■□□□□ 0.89
SQSTM1-210ENST00000506042 GSDMDP57764 484 aa20.62■□□□□ 0.89
SQSTM1-210ENST00000506042 TAS2R40P59535 323 aa20.62■□□□□ 0.89
SQSTM1-210ENST00000506042 HSD11B2P80365 405 aa20.62■□□□□ 0.89
SQSTM1-210ENST00000506042 DMPKQ09013 629 aa20.62■□□□□ 0.89
SQSTM1-210ENST00000506042 SLC10A2Q12908 348 aaPredicted RBP20.62■□□□□ 0.89
SQSTM1-210ENST00000506042 PRKAA1Q13131 559 aa20.62■□□□□ 0.89
SQSTM1-210ENST00000506042 KRT33BQ14525 404 aa20.62■□□□□ 0.89
SQSTM1-210ENST00000506042 IHHQ14623 411 aa20.62■□□□□ 0.89
SQSTM1-210ENST00000506042 TEX44Q53QW1 395 aa20.62■□□□□ 0.89
SQSTM1-210ENST00000506042 ZNF648Q5T619 568 aaPredicted RBP20.62■□□□□ 0.89
SQSTM1-210ENST00000506042 ATP1A1-AS1Q5TC04 95 aa20.62■□□□□ 0.89
SQSTM1-210ENST00000506042 LRRC38Q5VT99 294 aa20.62■□□□□ 0.89
SQSTM1-210ENST00000506042 PLD5Q8N7P1 536 aa20.62■□□□□ 0.89
SQSTM1-210ENST00000506042 LRRC45Q96CN5 670 aa20.62■□□□□ 0.89
SQSTM1-210ENST00000506042 ACTL8Q9H568 366 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms