RNA–Protein interactions for RNA: ENST00000351808.9

IFT88-202, Transcript of intraflagellar transport 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene IFT88, Length 2,856 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT88-202ENST00000351808 RHAGQ02094 409 aa13.12□□□□□ -0.31
IFT88-202ENST00000351808 SMN1Q16637 294 aaKnown RBP13.12□□□□□ -0.31
IFT88-202ENST00000351808 BTBD16Q32M84 506 aa13.12□□□□□ -0.31
IFT88-202ENST00000351808 TRIM48Q8IWZ4 208 aa13.12□□□□□ -0.31
IFT88-202ENST00000351808 MIER2Q8N344 545 aa13.12□□□□□ -0.31
IFT88-202ENST00000351808 ZNF540Q8NDQ6 660 aa13.12□□□□□ -0.31
IFT88-202ENST00000351808 PJA1Q8NG27 643 aa13.12□□□□□ -0.31
IFT88-202ENST00000351808 HEXDCQ8WVB3 486 aa13.12□□□□□ -0.31
IFT88-202ENST00000351808 LPAR1Q92633 364 aa13.12□□□□□ -0.31
IFT88-202ENST00000351808 TRNT1Q96Q11 434 aaKnown RBP13.12□□□□□ -0.31
IFT88-202ENST00000351808 APOL2Q9BQE5 337 aa13.12□□□□□ -0.31
IFT88-202ENST00000351808 EML4Q9HC35 981 aaKnown RBP13.12□□□□□ -0.31
IFT88-202ENST00000351808 EIF2B3Q9NR50 452 aaKnown RBP13.12□□□□□ -0.31
IFT88-202ENST00000351808 BFARQ9NZS9 450 aa13.12□□□□□ -0.31
IFT88-202ENST00000351808 TPRKBQ9Y3C4 175 aa13.12□□□□□ -0.31
IFT88-202ENST00000351808 PCDHB14Q9Y5E9 798 aa13.12□□□□□ -0.31
IFT88-202ENST00000351808 E5RI56 91 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 I3L521 148 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 UBFD1O14562 309 aaKnown RBP13.11□□□□□ -0.31
IFT88-202ENST00000351808 PLA2G6O60733 806 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 B3GALNT1O75752 331 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 MICAL2O94851 1124 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 PRKCBP05771 671 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 TPH1P17752 444 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 GADD45AP24522 165 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 ERP29P30040 261 aaKnown RBP13.11□□□□□ -0.31
IFT88-202ENST00000351808 UGT2B10P36537 528 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 TNFSF9P41273 254 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 GRB7Q14451 532 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 RPS6KA2Q15349 733 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 PAGE3Q5JUK9 113 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 ARMC4Q5T2S8 1044 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 JADE1Q6IE81 842 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 ZNF767PQ75MW2 155 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 DCP1BQ8IZD4 617 aaKnown RBP13.11□□□□□ -0.31
IFT88-202ENST00000351808 LINC00469Q8N7U9 141 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 GALNT11Q8NCW6 608 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 P2RY11Q96G91 374 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 TRIM54Q9BYV2 358 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 LIN7BQ9HAP6 207 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 CPSF3Q9UKF6 684 aaKnown RBP13.11□□□□□ -0.31
IFT88-202ENST00000351808 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.11□□□□□ -0.31
IFT88-202ENST00000351808 LOC100506127A0A0U1RQW1 187 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 EEF2KO00418 725 aaKnown RBP13.11□□□□□ -0.31
IFT88-202ENST00000351808 GNGT2O14610 69 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 BCKDKO14874 412 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 PLD2O14939 933 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 ATXN1P54253 815 aaKnown RBP13.11□□□□□ -0.31
IFT88-202ENST00000351808 SLC12A2P55011 1212 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 CHRNB3Q05901 458 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 SMARCB1Q12824 385 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 TKFCQ3LXA3 575 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 PM20D1Q6GTS8 502 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 C15orf52Q6ZUT6 534 aaKnown RBP13.11□□□□□ -0.31
IFT88-202ENST00000351808 FAM183BPQ6ZVS7 135 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 FAM86B1Q8N7N1 296 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 UBASH3BQ8TF42 649 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 ZNF566Q969W8 418 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 C19orf60Q96EN9 201 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 MRPL57Q9BQC6 102 aaKnown RBP13.11□□□□□ -0.31
IFT88-202ENST00000351808 DPEP3Q9H4B8 488 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 RHOJQ9H4E5 214 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 RAPGEFL1Q9UHV5 662 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 SBF2Q86WG5 1849 aa13.11□□□□□ -0.31
IFT88-202ENST00000351808 OR2B3O76000 313 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 AHSGP02765 367 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 TRAPPC2P0DI81 140 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 TRAPPC2BP0DI82 140 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 RAP2AP10114 183 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 SDC4P31431 198 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 RYKP34925 604 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 HNF4AP41235 474 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 ASPAP45381 313 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 MGAT3Q09327 533 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 DBPQ10586 325 aaPredicted RBP13.1□□□□□ -0.31
IFT88-202ENST00000351808 ZNF699Q32M78 642 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 CCNJQ5T5M9 372 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 NDUFAF5Q5TEU4 345 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 SHEQ5VZ18 495 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 CDH24Q86UP0 819 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 YIPF7Q8N8F6 280 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 ZNF557Q8N988 423 aaPredicted RBP13.1□□□□□ -0.31
IFT88-202ENST00000351808 ITFG1Q8TB96 612 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 SLC38A4Q969I6 547 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 MARVELD3Q96A59 401 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 MSANTD3Q96H12 275 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 TWNKQ96RR1 684 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 ACOX2Q99424 681 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 NXF2Q9GZY0 626 aaKnown RBP13.1□□□□□ -0.31
IFT88-202ENST00000351808 POLR3FQ9H1D9 316 aaPredicted RBP13.1□□□□□ -0.31
IFT88-202ENST00000351808 WASH6PQ9NQA3 447 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 USE1Q9NZ43 259 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 FBXO40Q9UH90 709 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 UTS2RQ9UKP6 389 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 SNX7Q9UNH6 387 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 GREB1LQ9C091 1923 aaPredicted RBP13.1□□□□□ -0.31
IFT88-202ENST00000351808 PNMA8CA0A1B0GUJ8 204 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 INO80B-WBP1J3KQ70 363 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 RGS10O43665 173 aa13.1□□□□□ -0.31
IFT88-202ENST00000351808 CST1P01037 141 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms