RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 CXorf40BQ96DE9 158 aa9.03□□□□□ -0.96
HDDC3-204ENST00000559834 TTC25Q96NG3 672 aa9.03□□□□□ -0.96
HDDC3-204ENST00000559834 FCRL4Q96PJ5 515 aa9.03□□□□□ -0.96
HDDC3-204ENST00000559834 RNF157Q96PX1 679 aa9.03□□□□□ -0.96
HDDC3-204ENST00000559834 TIMM29Q9BSF4 260 aa9.03□□□□□ -0.96
HDDC3-204ENST00000559834 MAK16Q9BXY0 300 aaKnown RBP9.03□□□□□ -0.96
HDDC3-204ENST00000559834 RAB33BQ9H082 229 aa9.03□□□□□ -0.96
HDDC3-204ENST00000559834 PDE7BQ9NP56 450 aa9.03□□□□□ -0.96
HDDC3-204ENST00000559834 SLC40A1Q9NP59 571 aa9.03□□□□□ -0.96
HDDC3-204ENST00000559834 ARFGAP3Q9NP61 516 aa9.03□□□□□ -0.96
HDDC3-204ENST00000559834 ZNF624Q9P2J8 865 aaPredicted RBP9.03□□□□□ -0.96
HDDC3-204ENST00000559834 UVRAGQ9P2Y5 699 aa9.03□□□□□ -0.96
HDDC3-204ENST00000559834 EPHA6Q9UF33 1036 aa9.03□□□□□ -0.96
HDDC3-204ENST00000559834 CROTQ9UKG9 612 aa9.03□□□□□ -0.96
HDDC3-204ENST00000559834 CAPN11Q9UMQ6 739 aa9.03□□□□□ -0.96
HDDC3-204ENST00000559834 SHOC2Q9UQ13 582 aa9.03□□□□□ -0.96
HDDC3-204ENST00000559834 DNAJC16Q9Y2G8 782 aa9.03□□□□□ -0.96
HDDC3-204ENST00000559834 LUC7L2Q9Y383 392 aaKnown RBP9.03□□□□□ -0.96
HDDC3-204ENST00000559834 ADGRG1Q9Y653 693 aa9.03□□□□□ -0.96
HDDC3-204ENST00000559834 SLC30A1Q9Y6M5 507 aa9.03□□□□□ -0.96
HDDC3-204ENST00000559834 HECTD1Q9ULT8 2610 aa9.02□□□□□ -0.96
HDDC3-204ENST00000559834 DOPEY2Q9Y3R5 2298 aa9.02□□□□□ -0.96
HDDC3-204ENST00000559834 C21orf140B9A014 251 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 SPAG6O75602 509 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 CREG1O75629 220 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 RFPL1O75677 317 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 FGF5P12034 268 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 ZFXP17010 805 aaPredicted RBP9.02□□□□□ -0.97
HDDC3-204ENST00000559834 ZNF28P17035 718 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 F8A1P23610 371 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 KDELR1P24390 212 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 HALP42357 657 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 LEPRP48357 1165 aaKnown RBP9.02□□□□□ -0.97
HDDC3-204ENST00000559834 UBASH3AP57075 661 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 SH3BP2P78314 561 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 CDK18Q07002 472 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 AP1B1Q10567 949 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 GTF2H3Q13889 308 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 GALNT3Q14435 633 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 PDK1Q15118 436 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 SEPT7Q16181 437 aaKnown RBP9.02□□□□□ -0.97
HDDC3-204ENST00000559834 ZNF648Q5T619 568 aaPredicted RBP9.02□□□□□ -0.97
HDDC3-204ENST00000559834 ATP1A1-AS1Q5TC04 95 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 AGAP9Q5VTM2 703 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 IRGCQ6NXR0 463 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 ASB18Q6ZVZ8 466 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 PRSS42Q7Z5A4 293 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 CNTD1Q8N815 330 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 LRRN4Q8WUT4 740 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 CTNNBL1Q8WYA6 563 aaPredicted RBP9.02□□□□□ -0.97
HDDC3-204ENST00000559834 KLHL6Q8WZ60 621 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 UBXN4Q92575 508 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 EID2BQ96D98 161 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 IMP4Q96G21 291 aaKnown RBP9.02□□□□□ -0.97
HDDC3-204ENST00000559834 ELMO2Q96JJ3 720 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 TWSG1Q9GZX9 223 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 BRD8Q9H0E9 1235 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 SLC25A51Q9H1U9 297 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 CBX8Q9HC52 389 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.02□□□□□ -0.97
HDDC3-204ENST00000559834 DTLQ9NZJ0 730 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 OGFRQ9NZT2 677 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 SCHIP1Q9P0W5 487 aaPredicted RBP9.02□□□□□ -0.97
HDDC3-204ENST00000559834 NFKBIL1Q9UBC1 381 aaPredicted RBP9.02□□□□□ -0.97
HDDC3-204ENST00000559834 SLC23A2Q9UGH3 650 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 LNPEPQ9UIQ6 1025 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 RARRES3Q9UL19 164 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 PLAAQ9Y263 795 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 TP53TG5Q9Y2B4 290 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 MAN2B2Q9Y2E5 1009 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 PCDHGA6Q9Y5G7 932 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 HEY1Q9Y5J3 304 aa9.02□□□□□ -0.97
HDDC3-204ENST00000559834 MRPS18BQ9Y676 258 aaKnown RBP9.02□□□□□ -0.97
HDDC3-204ENST00000559834 CDC14CA4D256 554 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 CLEC18AA5D8T8 446 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 GOLGA6L3A6NEY3 463 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 ZNF487B1APH4 448 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 APOL1O14791 398 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 PPP1R12AO14974 1030 aaPredicted RBP9.01□□□□□ -0.97
HDDC3-204ENST00000559834 NDST3O95803 873 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 PIRTP0C851 137 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 NELFEP18615 380 aaKnown RBP9.01□□□□□ -0.97
HDDC3-204ENST00000559834 RPL10P27635 214 aaKnown RBP9.01□□□□□ -0.97
HDDC3-204ENST00000559834 CASP14P31944 242 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 TNNT3P45378 269 aaPredicted RBP9.01□□□□□ -0.97
HDDC3-204ENST00000559834 CAPZBP47756 277 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 CD97P48960 835 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 ARL4DP49703 201 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 TAS2R40P59535 323 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 FANCCQ00597 558 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 PDE1BQ01064 536 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 ACY1Q03154 408 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 TMEM115Q12893 351 aaPredicted RBP9.01□□□□□ -0.97
HDDC3-204ENST00000559834 ZBTB17Q13105 803 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 DNASE1L3Q13609 305 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 GPR18Q14330 331 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 SLC14A2Q15849 920 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 PCSK7Q16549 785 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 PLA2G4EQ3MJ16 856 aa9.01□□□□□ -0.97
HDDC3-204ENST00000559834 ODF2Q5BJF6 829 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms