RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 SLC30A1Q9Y6M5 507 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 CAPN6Q9Y6Q1 641 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 CCDC187A0A096LP49 1063 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 PFDN6O15212 129 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 DUX1O43812 170 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 NUAK1O60285 661 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 CPNE6O95741 557 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 IFNB1P01574 187 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 RPLP0P05388 317 aaKnown RBP8.57□□□□□ -1.04
USP3-208ENST00000558285 GSTM1P09488 218 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 GIMD1P0DJR0 217 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 GM2AP17900 193 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 IDSP22304 550 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 PSMB4P28070 264 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 CD68P34810 354 aaPredicted RBP8.57□□□□□ -1.04
USP3-208ENST00000558285 LSSP48449 732 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 CLCNKAP51800 687 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 INHBCP55103 352 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 GSTM4Q03013 218 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 TRA2AQ13595 282 aaKnown RBP eCLIP8.57□□□□□ -1.04
USP3-208ENST00000558285 RTP5Q14D33 572 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 SKIDA1Q1XH10 827 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 ISXQ2M1V0 245 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 GPR33Q49SQ1 333 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 WLSQ5T9L3 541 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 MEI1Q5TIA1 1274 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 CDCP2Q5VXM1 449 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 CHST15Q7LFX5 561 aaPredicted RBP8.57□□□□□ -1.04
USP3-208ENST00000558285 YTHDF3Q7Z739 585 aaKnown RBP8.57□□□□□ -1.04
USP3-208ENST00000558285 PIM3Q86V86 326 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 TRAPPC5Q8IUR0 188 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 DNAAF3Q8N9W5 541 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 PBKQ96KB5 322 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 NSMCE3Q96MG7 304 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 CMKLR1Q99788 373 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 SH3GL3Q99963 347 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 TIMM29Q9BSF4 260 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 TSSK1BQ9BXA7 367 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 LRRN3Q9H3W5 708 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 TRIM10Q9UDY6 481 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 CRLS1Q9UJA2 301 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 PPP2R2CQ9Y2T4 447 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 TMEM98Q9Y2Y6 226 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 PDZK1P1A8MUH7 402 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 DDX3YO15523 660 aaKnown RBP8.56□□□□□ -1.04
USP3-208ENST00000558285 USP12O75317 370 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 PIRTP0C851 137 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 JMJD7P0C870 316 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 BPIP17213 487 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 EPHA4P54764 986 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 UCNP55089 124 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 PCBP4P57723 403 aaKnown RBP8.56□□□□□ -1.04
USP3-208ENST00000558285 ERVPABLB-1P60509 514 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 ADCY2Q08462 1091 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 CDH17Q12864 832 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 KLF1Q13351 362 aaPredicted RBP8.56□□□□□ -1.04
USP3-208ENST00000558285 HLTFQ14527 1009 aaKnown RBP eCLIP8.56□□□□□ -1.04
USP3-208ENST00000558285 CCNG2Q16589 344 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 LYPLAL1Q5VWZ2 237 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 ARMC3Q5W041 872 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 DRICH1Q6PGQ1 229 aaPredicted RBP8.56□□□□□ -1.04
USP3-208ENST00000558285 RANBP10Q6VN20 620 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 MICALCLQ6ZW33 695 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 PROSER1Q86XN7 944 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 GPR26Q8NDV2 337 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 SLC35B2Q8TB61 432 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 CCDC110Q8TBZ0 833 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 ZNF398Q8TD17 642 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 FGF11Q92914 225 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 LIN37Q96GY3 246 aaPredicted RBP8.56□□□□□ -1.04
USP3-208ENST00000558285 OXNAD1Q96HP4 312 aaPredicted RBP8.56□□□□□ -1.04
USP3-208ENST00000558285 OR2AG1Q9H205 316 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 OSGEPL1Q9H4B0 414 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 ARNT2Q9HBZ2 717 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 SARS2Q9NP81 518 aaKnown RBP8.56□□□□□ -1.04
USP3-208ENST00000558285 SMOXQ9NWM0 555 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 KCNK4Q9NYG8 393 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 ZMIZ1Q9ULJ6 1067 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 PACSIN2Q9UNF0 486 aaPredicted RBP8.56□□□□□ -1.04
USP3-208ENST00000558285 PCDHGA8Q9Y5G5 932 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 ANKRD36A6QL64 1941 aa8.56□□□□□ -1.04
USP3-208ENST00000558285 TP53BP1Q12888 1972 aaPredicted RBP8.56□□□□□ -1.04
USP3-208ENST00000558285 HEATR9A2RTY3 570 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 FAM149AA5PLN7 773 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 D6RAR5 112 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 LIASO43766 372 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 CEP104O60308 925 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 KDM1AO60341 852 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 PRAMEF1O95521 474 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 AP2A1O95782 977 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 TOP3BO95985 862 aaKnown RBP8.55□□□□□ -1.04
USP3-208ENST00000558285 VIPP01282 170 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 ACP5P13686 325 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 F3P13726 295 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 ALDH4A1P30038 563 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 CCKBRP32239 447 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 FASLGP48023 281 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 POLD2P49005 469 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 GABREP78334 506 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 CYP4F3Q08477 520 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms